Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 4.1e-122 441.4 224 100.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.3e-79 297.7 211 71.6
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 7.3e-79 297.7 217 66.8
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 9.5e-79 297.4 210 70.0
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.8e-78 295.8 215 68.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.8e-78 295.8 217 67.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.6e-78 295.4 224 65.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.6e-78 295.4 216 68.1
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.6e-78 295.4 209 70.3
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.2e-78 294.7 210 69.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.4e-77 293.5 222 66.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 8.9e-77 290.8 218 67.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.2e-76 290.4 221 66.5
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.0e-76 289.7 216 67.6
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.6e-76 289.3 217 66.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.4e-76 288.9 224 65.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.4e-76 288.9 211 69.7
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.4e-76 288.5 222 65.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.8e-76 288.1 222 64.4
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.5e-76 287.7 211 69.2
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 9.8e-76 287.3 218 66.5
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 9.8e-76 287.3 216 65.7
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.3e-75 287.0 224 64.3
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.3e-75 287.0 224 63.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.2e-75 286.2 217 65.9
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.2e-75 286.2 216 66.2
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.9e-75 285.8 224 63.8
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-75 285.8 211 68.7
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 3.7e-75 285.4 222 64.4
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.7e-75 285.4 222 64.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.9e-75 285.0 215 66.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.9e-75 285.0 217 65.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 4.9e-75 285.0 209 66.5
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 6.4e-75 284.6 217 65.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-75 284.6 222 64.4
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 8.3e-75 284.3 217 65.0
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 8.3e-75 284.3 222 64.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.1e-74 283.9 238 63.0
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.1e-74 283.9 215 65.6
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-74 283.5 222 63.5
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.4e-74 283.5 229 64.2
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.9e-74 283.1 213 65.3
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.9e-74 283.1 217 66.8
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.2e-74 282.3 217 65.0
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.2e-74 282.3 216 65.3
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.2e-74 282.3 209 67.0
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.2e-74 282.3 217 64.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 4.1e-74 282.0 215 65.6
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 4.1e-74 282.0 216 66.2
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.1e-74 282.0 217 65.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 5.4e-74 281.6 217 65.9
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.4e-74 281.6 205 66.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 7.0e-74 281.2 222 66.2
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 7.0e-74 281.2 225 65.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 9.2e-74 280.8 217 64.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.2e-74 280.8 218 64.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 9.2e-74 280.8 216 64.4
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-73 280.4 217 66.4
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.6e-73 280.0 215 65.6
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.6e-73 280.0 210 65.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-73 280.0 218 67.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.7e-73 279.3 210 65.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.7e-73 279.3 219 62.6
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.7e-73 279.3 217 62.7
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.7e-73 279.3 210 65.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.5e-73 278.9 217 64.5
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 6.0e-73 278.1 217 64.5
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 6.0e-73 278.1 215 66.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.0e-73 278.1 215 65.6
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-72 277.3 215 65.1
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.0e-72 277.3 221 67.4
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-72 276.9 216 63.9
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.3e-72 276.9 216 63.9
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.7e-72 276.6 215 65.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-72 276.6 215 65.1
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-72 276.6 216 64.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.7e-72 276.6 217 64.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.9e-72 275.4 210 64.3
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 3.9e-72 275.4 208 64.9
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 3.9e-72 275.4 210 64.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.0e-72 275.0 217 65.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 5.0e-72 275.0 205 66.3
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.0e-72 275.0 217 63.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 6.6e-72 274.6 217 63.6
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-71 273.9 216 64.4
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.5e-71 273.5 216 63.9
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.9e-71 273.1 218 62.8
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-71 272.3 217 62.2
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 4.3e-71 271.9 208 64.9
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 5.6e-71 271.6 216 63.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.5e-71 270.8 202 67.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.5e-71 270.8 202 67.8
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.2e-70 270.4 217 61.8
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-70 270.0 203 67.5
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.6e-70 270.0 217 62.2
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.6e-70 270.0 217 62.2
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.1e-70 269.6 216 62.0
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 3.6e-70 268.9 272 55.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 4.7e-70 268.5 217 62.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 4.7e-70 268.5 230 61.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.2e-70 268.1 217 62.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.1e-70 267.7 212 62.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.1e-69 267.3 217 62.7
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-69 267.3 216 62.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 6.8e-69 264.6 223 61.4
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.6e-68 262.7 210 62.9
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 7.5e-68 261.2 211 62.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 4.9e-67 258.5 217 59.4
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.4e-66 256.9 212 61.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 4.1e-66 255.4 224 59.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 5.4e-66 255.0 215 61.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.4e-66 255.0 217 58.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 9.2e-66 254.2 215 61.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.5e-65 252.3 228 57.5
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 6.0e-65 251.5 250 55.6
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 7.8e-65 251.1 308 45.8
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.1e-63 247.3 198 63.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.9e-63 246.5 222 56.3
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.1e-62 243.0 170 70.6
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.8e-62 242.7 218 57.3
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.0e-60 236.5 215 59.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.9e-59 232.6 232 58.6
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 3.7e-59 232.3 170 67.6
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-59 231.1 164 68.9
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.9e-58 229.9 228 53.9
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.4e-58 229.6 235 55.3
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.7e-57 226.1 220 55.0
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 4.6e-57 225.3 176 60.8
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 6.0e-57 224.9 216 56.0
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.9e-55 219.9 241 48.5
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.6e-54 216.9 215 54.9
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.8e-53 213.4 217 53.5
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.7e-49 199.5 120 76.7
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 6.0e-49 198.4 145 67.6
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.3e-48 197.2 167 60.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-48 196.4 216 50.5
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.1e-47 194.1 159 61.0
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.3e-46 190.7 126 68.3
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.2e-46 188.3 117 73.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.4e-45 187.2 164 61.6
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 5.3e-45 185.3 124 70.2
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 4.2e-42 175.6 158 58.9
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 9.3e-42 174.5 219 46.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.3e-39 165.6 103 73.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.1e-37 159.5 215 42.3
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 4.0e-37 159.1 132 59.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.6e-33 145.6 292 35.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.0e-32 144.4 186 44.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.1e-31 141.0 190 47.9
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 9.6e-31 137.9 179 45.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.7e-25 119.8 118 59.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.7e-25 119.8 81 69.1
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-22 110.5 152 44.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 5.3e-21 105.5 82 65.9
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 3.4e-20 102.8 168 38.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 7.6e-20 101.7 75 64.0
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.9e-19 99.8 62 71.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 5.0e-19 99.0 100 52.0
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.5e-18 96.7 66 71.2
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 5.5e-18 95.5 95 51.6
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.2e-17 94.4 110 49.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 6.1e-17 92.0 94 54.3
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.8e-16 90.5 238 33.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.9e-16 89.4 81 54.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.5e-15 87.4 59 71.2
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 9.7e-15 84.7 169 36.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 6.3e-14 82.0 137 36.5
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-12 76.3 81 51.9
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 6.5e-11 72.0 168 31.0
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.4e-08 64.3 42 73.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 8.8e-08 61.6 52 53.8
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-06 57.8 51 54.9
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 2.8e-06 56.6 42 69.0
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 4.8e-06 55.8 44 61.4


User provided reference genes

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