Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 2.5e-22 107.8 53 100.0
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 1.4e-12 75.5 43 83.7
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 4.0e-12 73.9 40 87.5
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 5.3e-12 73.6 43 79.1
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.2e-11 72.4 43 79.1
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 2.0e-11 71.6 43 79.1
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 3.4e-11 70.9 43 76.7
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 4.5e-11 70.5 40 85.0
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 5.8e-11 70.1 43 76.7
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 9.9e-11 69.3 40 80.0
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.3e-10 68.9 43 74.4
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 1.7e-10 68.6 43 72.1
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.7e-10 68.6 39 79.5
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 2.2e-10 68.2 43 74.4
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 2.2e-10 68.2 43 74.4
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 2.9e-10 67.8 43 76.7
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 2.9e-10 67.8 43 74.4
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 3.8e-10 67.4 40 77.5
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.8e-10 67.4 40 77.5
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.8e-10 67.4 43 74.4
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 4.9e-10 67.0 40 80.0
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.9e-10 67.0 43 74.4
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.9e-10 67.0 39 79.5
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 4.9e-10 67.0 39 79.5
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 6.4e-10 66.6 43 74.4
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 8.4e-10 66.2 43 74.4
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 8.4e-10 66.2 43 74.4
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.1e-09 65.9 43 74.4
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 1.1e-09 65.9 43 72.1
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 1.4e-09 65.5 43 72.1
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.9e-09 65.1 43 72.1
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.9e-09 65.1 43 72.1
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 2.4e-09 64.7 43 72.1
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 3.2e-09 64.3 43 69.8
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 3.2e-09 64.3 42 73.8
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 3.2e-09 64.3 43 69.8
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 4.2e-09 63.9 44 65.9
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 4.2e-09 63.9 43 69.8
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 4.2e-09 63.9 43 69.8
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 4.2e-09 63.9 43 69.8
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 4.2e-09 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 5.5e-09 63.5 39 74.4
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 5.5e-09 63.5 39 74.4
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 69.8
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 69.8
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 67.4
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 67.4
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 69.8
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 5.5e-09 63.5 43 69.8
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 5.5e-09 63.5 40 72.5
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 5.5e-09 63.5 44 68.2
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 7.1e-09 63.2 39 74.4
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 7.1e-09 63.2 43 69.8
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 7.1e-09 63.2 44 68.2
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 7.1e-09 63.2 42 71.4
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 7.1e-09 63.2 43 69.8
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 9.3e-09 62.8 43 69.8
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 9.3e-09 62.8 43 67.4
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 9.3e-09 62.8 43 67.4
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 9.3e-09 62.8 43 67.4
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 1.2e-08 62.4 43 67.4
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 1.2e-08 62.4 39 71.8
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 1.2e-08 62.4 43 69.8
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 1.2e-08 62.4 43 69.8
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 1.2e-08 62.4 43 69.8
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.6e-08 62.0 43 67.4
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.6e-08 62.0 43 69.8
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 2.1e-08 61.6 43 65.1
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 67.4
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 65.1
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 69.8
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 2.7e-08 61.2 43 67.4
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 3.5e-08 60.8 40 72.5
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 3.5e-08 60.8 43 65.1
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 3.5e-08 60.8 39 74.4
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 3.5e-08 60.8 47 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 4.6e-08 60.5 43 67.4
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 4.6e-08 60.5 43 67.4
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 6.0e-08 60.1 43 67.4
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 6.0e-08 60.1 43 67.4
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 6.0e-08 60.1 43 67.4
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 65.1
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 65.1
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 62.8
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 62.8
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 62.8
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 67.4
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 67.4
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 7.9e-08 59.7 43 67.4
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 1.0e-07 59.3 42 64.3
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.0e-07 59.3 43 65.1
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.0e-07 59.3 43 65.1
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 1.0e-07 59.3 43 62.8
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 1.0e-07 59.3 38 73.7
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.3e-07 58.9 44 70.5
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 1.3e-07 58.9 43 65.1
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 1.3e-07 58.9 43 62.8
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 1.8e-07 58.5 39 69.2
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 1.8e-07 58.5 43 65.1
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 2.3e-07 58.2 43 65.1
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 2.3e-07 58.2 43 62.8
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 2.3e-07 58.2 44 65.9
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 3.0e-07 57.8 47 57.4
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 3.9e-07 57.4 39 64.1
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 5.1e-07 57.0 39 74.4
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 5.1e-07 57.0 43 62.8
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 5.1e-07 57.0 43 62.8
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 5.1e-07 57.0 43 65.1
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 5.1e-07 57.0 39 66.7
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 1.1e-06 55.8 43 62.8
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.1e-06 55.8 43 62.8
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.1e-06 55.8 43 62.8
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.1e-06 55.8 43 62.8
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 1.5e-06 55.5 40 65.0
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 1.9e-06 55.1 43 62.8
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 1.9e-06 55.1 39 71.8
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 1.9e-06 55.1 43 67.4
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 1.9e-06 55.1 43 62.8
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.5e-06 54.7 31 80.6
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 3.3e-06 54.3 40 65.0
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 4.3e-06 53.9 43 60.5
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 4.3e-06 53.9 40 62.5
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 4.3e-06 53.9 39 66.7
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 4.3e-06 53.9 39 66.7
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 5.6e-06 53.5 43 62.8
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 5.6e-06 53.5 43 60.5
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 9.6e-06 52.8 43 58.1
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 9.6e-06 52.8 39 66.7
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 9.6e-06 52.8 39 64.1
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 9.6e-06 52.8 39 64.1


User provided reference genes

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