Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 8.9e-229 796.6 399 100.0
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 4.9e-126 455.3 377 63.4
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.6e-124 450.3 382 62.3
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.0e-124 449.9 381 63.8
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 6.6e-123 444.9 392 61.5
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 5.6e-122 441.8 381 61.9
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.8e-121 439.5 384 61.7
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 2.8e-121 439.5 393 60.6
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 8.9e-120 434.5 379 59.4
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 3.4e-119 432.6 380 60.3
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.3e-118 430.6 383 59.5
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 3.7e-118 429.1 395 57.5
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 6.4e-118 428.3 375 59.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 6.4e-118 428.3 379 61.2
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 7.0e-117 424.9 402 58.7
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.2e-116 424.1 377 59.7
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.6e-116 423.7 392 58.7
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 2.7e-116 422.9 379 59.6
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 2.7e-116 422.9 394 58.6
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.3e-115 420.6 392 57.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 1.7e-115 420.2 403 57.8
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 1.7e-115 420.2 399 56.6
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 2.3e-115 419.9 379 58.8
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 2.9e-115 419.5 382 59.2
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.9e-115 419.1 395 55.4
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 3.9e-115 419.1 395 57.7
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 5.0e-115 418.7 395 55.7
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.5e-114 417.2 380 58.2
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.9e-114 416.8 403 57.6
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.9e-114 416.8 381 59.1
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.9e-114 416.8 410 55.6
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 4.3e-114 415.6 382 59.7
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 5.6e-114 415.2 403 57.3
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 5.6e-114 415.2 394 57.4
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.2e-113 414.1 381 59.3
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.2e-113 414.1 381 59.3
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.2e-113 414.1 386 57.8
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 1.2e-113 414.1 383 59.0
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.6e-113 413.7 381 57.7
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.1e-113 413.3 383 57.7
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 2.1e-113 413.3 382 57.6
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 3.6e-113 412.5 386 57.8
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 3.6e-113 412.5 410 55.4
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 1.4e-112 410.6 377 56.8
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-112 410.6 381 58.5
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.4e-112 410.6 381 58.5
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.8e-112 410.2 408 55.4
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.8e-112 410.2 390 56.9
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.3e-112 409.8 380 57.9
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 3.1e-112 409.5 395 53.7
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 3.1e-112 409.5 407 55.3
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 6.8e-112 408.3 387 57.1
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 8.9e-112 407.9 410 55.4
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 8.9e-112 407.9 354 60.2
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.2e-111 407.5 402 56.5
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.5e-111 407.1 388 56.7
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 4.4e-111 405.6 410 54.4
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 4.4e-111 405.6 395 54.7
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 5.8e-111 405.2 395 54.9
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 9.8e-111 404.4 375 57.3
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.7e-110 403.7 390 56.7
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.7e-110 403.7 382 57.1
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 2.9e-110 402.9 425 52.9
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 2.9e-110 402.9 395 54.4
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 4.9e-110 402.1 390 56.4
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.3e-110 401.4 381 57.7
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.1e-109 401.0 396 55.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.4e-109 400.6 379 57.8
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 1.9e-109 400.2 391 55.5
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.9e-109 400.2 397 54.4
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.2e-108 397.5 415 53.0
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 1.6e-108 397.1 386 56.7
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.6e-108 397.1 408 54.4
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.0e-108 396.7 341 61.6
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 4.6e-108 395.6 383 55.4
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 2.3e-107 393.3 421 52.3
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 5.0e-107 392.1 394 52.0
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 5.0e-107 392.1 391 54.0
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.9e-106 390.2 395 53.2
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 9.5e-106 387.9 456 49.1
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 9.5e-106 387.9 395 52.9
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 1.2e-105 387.5 382 55.0
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.6e-105 386.0 395 52.9
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 2.3e-104 383.3 379 56.5
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.5e-103 380.6 399 53.9
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.0e-103 380.2 351 56.1
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 2.6e-103 379.8 347 58.8
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.6e-103 379.8 371 56.3
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 2.6e-103 379.8 376 55.6
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.7e-102 377.1 396 55.1
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.7e-102 377.1 395 53.9
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 3.7e-102 375.9 379 55.4
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 3.7e-102 375.9 348 58.6
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.1e-101 374.4 342 58.5
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 9.2e-101 371.3 401 53.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 2.7e-100 369.8 354 56.8
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 6.0e-100 368.6 331 60.7
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 7.8e-100 368.2 386 54.1
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.8e-96 357.1 291 65.6
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 7.6e-87 325.1 302 55.0
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.9e-85 320.5 431 44.3
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.3e-82 309.7 352 50.9
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 4.8e-81 305.8 398 46.0
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.5e-76 289.7 385 44.4
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.5e-76 289.7 385 44.4
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 5.3e-72 275.8 395 42.3
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 6.9e-72 275.4 249 59.4
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 2.9e-70 270.0 388 42.8
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.8e-65 253.4 157 77.7
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.2e-39 168.3 385 31.7
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 8.5e-30 135.6 268 35.4
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 8.0e-28 129.0 144 49.3
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 5.3e-24 116.3 112 53.6
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 7.7e-23 112.5 113 53.1
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 6.8e-19 99.4 156 41.7
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 1.3e-17 95.1 82 59.8
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 4.8e-17 93.2 190 33.7
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 3.7e-09 67.0 89 42.7
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.1e-08 65.5 96 45.8
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 9.2e-08 62.4 243 25.5
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.7e-07 59.3 96 42.7
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.3e-06 58.5 51 58.8


User provided reference genes

Program Settings