Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 7.4e-187 657.1 350 100.0
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 3.0e-132 475.7 349 70.8
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 5.4e-129 464.9 345 69.0
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.6e-128 463.4 342 69.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.7e-128 462.6 349 69.6
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 7.8e-128 461.1 345 67.8
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.3e-127 460.3 346 69.1
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.7e-127 459.9 349 69.1
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 7.3e-126 454.5 344 68.6
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 9.5e-126 454.1 349 67.0
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.0e-124 450.7 345 68.1
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 3.0e-124 449.1 346 67.3
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.4e-123 445.3 345 65.8
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 4.4e-123 445.3 345 66.1
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.3e-122 443.7 342 67.3
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.7e-122 443.4 345 68.4
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.9e-121 439.9 346 66.8
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 2.4e-121 439.5 348 66.4
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 3.2e-121 439.1 345 67.5
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 4.6e-120 435.3 347 66.6
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.0e-119 432.6 346 66.5
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 3.9e-119 432.2 348 65.2
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.1e-118 430.6 348 64.4
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 3.3e-118 429.1 342 65.8
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 7.3e-118 427.9 326 67.5
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 9.5e-118 427.6 341 66.3
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.1e-117 426.4 331 66.5
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.1e-117 426.4 340 65.0
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 2.8e-117 426.0 346 64.7
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 3.1e-116 422.5 345 64.9
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 5.2e-116 421.8 347 64.3
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.4e-115 419.1 344 64.8
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 4.4e-115 418.7 337 67.1
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.8e-115 418.3 335 66.3
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 9.8e-115 417.5 349 64.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 8.3e-114 414.5 350 62.6
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 1.4e-113 413.7 330 65.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.4e-113 413.7 330 65.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.4e-113 413.7 330 65.5
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.9e-113 413.3 330 65.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 2.4e-113 412.9 331 64.7
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.2e-113 412.5 345 63.5
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 7.0e-113 411.4 347 62.2
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 7.0e-113 411.4 344 63.1
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 9.2e-113 411.0 363 62.8
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 9.2e-113 411.0 349 63.6
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.2e-112 410.6 330 64.8
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.2e-112 410.6 346 63.3
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.1e-112 409.8 345 62.9
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.7e-112 409.5 323 66.9
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 7.8e-112 407.9 346 64.2
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 7.8e-112 407.9 424 55.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.0e-111 407.5 349 62.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.0e-111 405.2 344 62.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 5.0e-111 405.2 346 62.1
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.1e-110 404.1 294 71.4
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.5e-110 403.7 341 63.3
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.9e-110 403.3 346 62.4
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 5.6e-110 401.7 346 61.3
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.2e-109 400.6 344 61.9
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.2e-109 400.6 346 62.4
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 4.7e-109 398.7 299 69.2
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 8.1e-109 397.9 334 62.3
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.4e-108 397.1 346 61.3
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.8e-108 396.7 383 58.5
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 5.2e-108 395.2 346 61.3
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.2e-107 394.0 360 60.0
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 5.8e-107 391.7 346 61.0
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 5.8e-107 391.7 347 61.4
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-106 389.8 345 60.9
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.9e-106 389.4 346 59.5
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.9e-106 389.4 344 60.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.7e-106 389.0 345 60.6
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.9e-106 388.7 333 61.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 8.3e-106 387.9 334 61.1
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-105 387.5 334 61.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.4e-105 386.3 346 61.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.4e-105 386.3 342 60.5
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.1e-105 385.6 342 60.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 4.1e-105 385.6 331 61.3
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 9.2e-105 384.4 336 60.7
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.7e-104 382.9 342 60.5
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 3.5e-104 382.5 326 63.8
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.3e-103 380.6 318 64.5
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 4.3e-102 375.6 321 62.0
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 9.5e-102 374.4 348 58.0
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.6e-101 373.6 346 59.0
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 2.1e-101 373.2 348 57.8
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 3.1e-100 369.4 294 67.3
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.6e-99 366.3 280 67.5
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 4.2e-97 359.0 345 57.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.8e-96 354.8 323 58.8
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 7.8e-96 354.8 340 56.5
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 3.3e-94 349.4 337 56.4
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.6e-93 347.1 344 55.5
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.8e-93 346.3 296 62.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.8e-93 346.3 368 56.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 8.1e-93 344.7 297 62.3
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 9.9e-91 337.8 354 54.2
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.7e-90 337.0 345 55.1
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.2e-89 332.8 397 49.6
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.2e-88 330.9 266 67.7
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 6.0e-88 328.6 292 61.6
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.5e-86 323.9 285 62.1
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.6e-83 313.2 440 45.0
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 2.6e-83 313.2 342 52.0
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 5.4e-81 305.4 391 49.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 7.9e-80 301.6 226 69.0
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 5.6e-78 295.4 236 65.7
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.8e-77 293.1 240 66.2
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 3.7e-77 292.7 231 65.8
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.7e-77 292.7 250 61.2
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 5.3e-76 288.9 255 62.4
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.4e-75 286.2 410 44.9
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.3e-74 284.3 324 49.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 4.9e-74 282.3 334 47.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 6.4e-74 282.0 246 63.4
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.3e-69 267.7 279 56.3
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.4e-68 264.2 304 51.3
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.5e-66 255.4 336 44.0
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.9e-63 246.1 189 68.3
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 9.7e-54 214.9 206 55.3
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 5.3e-52 209.1 240 48.3
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.2e-51 208.0 196 57.1
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.5e-51 207.6 225 50.2
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.6e-48 197.6 133 78.9
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 5.5e-41 172.6 159 59.1
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.6e-40 171.0 139 62.6
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.3e-39 167.2 148 57.4
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-34 150.6 131 60.3
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 7.2e-33 145.6 309 31.4
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 5.2e-31 139.4 101 72.3
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.7e-29 133.3 97 68.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.1e-28 129.8 120 59.2
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.9e-25 120.9 219 36.1
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.1e-20 105.1 75 70.7
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.8e-18 96.7 180 41.1
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 8.9e-15 85.5 100 49.0
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 4.9e-13 79.7 52 76.9
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 1.4e-12 78.2 55 67.3
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 4.1e-12 76.6 78 50.0
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.2e-11 75.1 50 72.0
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 3.5e-11 73.6 106 36.8
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 3.5e-11 73.6 53 67.9
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.0e-10 72.0 77 49.4


User provided reference genes

Program Settings