Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G223 Amborella trichopoda HOM05D006858 ORTHO05D026559 4.6e-79 297.7 143 100.0
ATR0594G023 Amborella trichopoda HOM05D006858 ORTHO05D026559 6.3e-76 287.3 143 97.9
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 2.3e-62 242.3 137 86.9
Lj2E1141T3 Lonicera japonica HOM05D007291 ORTHO05D026559 7.5e-13 77.8 103 39.8
VMungo1215G0516 Vigna mungo HOM05D007291 ORTHO05D026559 3.7e-12 75.5 103 35.9
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.9e-11 73.2 107 34.6
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 4.1e-11 72.0 107 32.7
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 6.0e-10 68.2 89 37.1
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 7.8e-10 67.8 108 34.3
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.3e-09 67.0 87 35.6
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.7e-09 66.6 86 36.0
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 3.0e-09 65.9 87 33.3
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 3.0e-09 65.9 81 38.3
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 8.6e-09 64.3 86 37.2
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 1.1e-08 63.9 68 41.2
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.1e-08 63.9 145 29.0
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 1.1e-08 63.9 68 38.2
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 1.1e-08 63.9 84 34.5
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 1.5e-08 63.5 70 38.6
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 1.5e-08 63.5 88 33.0
Rhsim06G0202600 Rhododendron simsii HOM05D000424 ORTHO05D000355 2.5e-08 62.8 120 26.7
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 3.3e-08 62.4 68 41.2
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 4.3e-08 62.0 68 39.7
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 4.3e-08 62.0 86 34.9
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 4.3e-08 62.0 122 33.6
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 4.3e-08 62.0 70 34.3
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 5.6e-08 61.6 74 35.1
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 5.6e-08 61.6 68 41.2
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 7.3e-08 61.2 87 29.9
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 7.3e-08 61.2 87 29.9
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 9.5e-08 60.8 70 32.9
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 9.5e-08 60.8 68 36.8
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 1.2e-07 60.5 86 33.7
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 1.6e-07 60.1 74 31.1
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.6e-07 60.1 68 38.2
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.6e-07 60.1 88 29.5
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 1.6e-07 60.1 88 29.5
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 1.6e-07 60.1 68 39.7
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 1.6e-07 60.1 87 33.3
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 2.1e-07 59.7 70 37.1
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 2.1e-07 59.7 140 30.0
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 2.8e-07 59.3 99 33.3
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 2.8e-07 59.3 70 35.7
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 2.8e-07 59.3 68 38.2
FAN10G1019 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.8e-07 59.3 116 31.9
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.8e-07 59.3 68 38.2
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.8e-07 59.3 68 38.2
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 2.8e-07 59.3 111 28.8
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 2.8e-07 59.3 110 30.9
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 2.8e-07 59.3 88 30.7
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 3.6e-07 58.9 124 28.2
Medtr1g037080 Medicago truncatula HOM05D007291 ORTHO05D009038 3.6e-07 58.9 81 37.0
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 4.7e-07 58.5 75 33.3
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 6.2e-07 58.2 68 36.8
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.2e-07 58.2 70 35.7
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 6.2e-07 58.2 70 35.7
Lj1P839T30 Lonicera japonica HOM05D000424 ORTHO05D000355 6.2e-07 58.2 126 27.0
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 6.2e-07 58.2 74 33.8
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 6.2e-07 58.2 90 30.0
Sc10g0008050 Simmondsia chinensis HOM05D000424 ORTHO05D000355 8.1e-07 57.8 81 32.1
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 8.1e-07 57.8 68 33.8
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 1.1e-06 57.4 70 32.9
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.1e-06 57.4 70 35.7
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 1.1e-06 57.4 90 28.9
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.1e-06 57.4 87 32.2
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 1.1e-06 57.4 68 35.3
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.1e-06 57.4 70 35.7
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 1.1e-06 57.4 81 37.0
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 1.1e-06 57.4 110 29.1
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 1.1e-06 57.4 84 32.1
DCAR_020995 Daucus carota HOM05D000424 ORTHO05D000355 1.4e-06 57.0 141 26.2
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 1.4e-06 57.0 75 32.0
RcHm_v2.0_Chr1g0346001 Rosa chinensis HOM05D000300 ORTHO05D000383 1.4e-06 57.0 116 30.2
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 1.4e-06 57.0 70 34.3
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.8e-06 56.6 70 32.9
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 1.8e-06 56.6 88 33.0
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 1.8e-06 56.6 68 33.8
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 2.4e-06 56.2 68 35.3
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 2.4e-06 56.2 84 33.3
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-06 56.2 91 29.7
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-06 56.2 91 29.7
Dinv20202 Davidia involucrata HOM05D000424 ORTHO05D000355 2.4e-06 56.2 111 29.7
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.4e-06 56.2 75 33.3
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 3.1e-06 55.8 86 34.9
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 3.1e-06 55.8 138 27.5
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 3.1e-06 55.8 88 31.8
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 3.1e-06 55.8 70 34.3
Sabra14G0035700 Salix brachista HOM05D000300 ORTHO05D000383 3.1e-06 55.8 116 30.2
Sed0005187 Sechium edule HOM05D000424 ORTHO05D000355 3.1e-06 55.8 124 26.6
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 3.1e-06 55.8 85 30.6
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 3.1e-06 55.8 113 29.2
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 4.0e-06 55.5 88 29.5
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 4.0e-06 55.5 87 31.0
PGR119G1066 Punica granatum HOM05D000855 ORTHO05D000003 4.0e-06 55.5 76 35.5
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 5.2e-06 55.1 87 31.0
Potri.014G050300 Populus trichocarpa HOM05D000300 ORTHO05D000383 5.2e-06 55.1 116 29.3
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 5.2e-06 55.1 74 35.1
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 6.8e-06 54.7 91 30.8
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 6.8e-06 54.7 88 28.4
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 6.8e-06 54.7 88 28.4
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 6.8e-06 54.7 113 26.5
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 6.8e-06 54.7 75 32.0
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 8.9e-06 54.3 134 26.9
Sabra02G0108500 Salix brachista HOM05D000300 ORTHO05D000383 8.9e-06 54.3 116 29.3
Sabra14G0037800 Salix brachista HOM05D000300 ORTHO05D000383 8.9e-06 54.3 116 29.3


User provided reference genes

Program Settings