Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 4.5e-136 488.0 264 100.0
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 2.9e-119 432.2 258 89.5
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 2.9e-119 432.2 261 89.7
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 1.4e-118 429.9 264 86.0
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 7.2e-118 427.6 265 86.4
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 1.6e-117 426.4 265 85.7
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 1.6e-117 426.4 265 84.9
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 1.6e-117 426.4 265 87.2
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 6.1e-117 424.5 278 84.2
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 1.4e-116 423.3 261 86.2
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 1.4e-116 423.3 265 86.4
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 1.4e-116 423.3 260 86.9
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.8e-116 422.9 265 84.5
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 2.3e-116 422.5 265 83.8
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 3.9e-116 421.8 265 83.8
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.9e-116 421.8 265 84.9
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 5.1e-116 421.4 257 87.5
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 5.1e-116 421.4 264 85.2
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 6.7e-116 421.0 265 84.2
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 8.8e-116 420.6 265 84.2
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.1e-115 420.2 265 84.5
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 1.1e-115 420.2 265 84.5
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 1.5e-115 419.9 264 83.7
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.5e-115 419.9 265 84.2
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 1.5e-115 419.9 261 84.7
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.0e-115 419.5 265 84.5
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 2.5e-115 419.1 265 84.2
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 3.3e-115 418.7 265 84.9
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 3.3e-115 418.7 257 87.5
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 3.3e-115 418.7 265 84.5
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 4.3e-115 418.3 263 86.3
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 7.4e-115 417.5 260 84.6
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 7.4e-115 417.5 265 83.8
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 7.4e-115 417.5 265 83.8
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 1.7e-114 416.4 265 84.5
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 2.2e-114 416.0 265 84.5
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 2.8e-114 415.6 259 86.1
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.1e-113 413.7 265 82.6
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 1.8e-113 412.9 265 82.6
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 2.4e-113 412.5 260 81.9
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 4.1e-113 411.8 265 81.9
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 6.9e-113 411.0 255 85.1
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 6.9e-113 411.0 265 83.4
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 9.1e-113 410.6 261 84.7
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 1.2e-112 410.2 264 82.6
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 1.5e-112 409.8 265 82.3
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 2.0e-112 409.5 274 79.6
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 2.0e-112 409.5 265 81.9
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 2.6e-112 409.1 254 84.3
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 2.6e-112 409.1 260 83.5
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 4.5e-112 408.3 258 84.9
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 7.7e-112 407.5 261 83.5
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 1.0e-111 407.1 253 83.8
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 1.3e-111 406.8 253 83.8
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 1.3e-111 406.8 265 81.9
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.3e-111 406.8 253 84.6
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 1.7e-111 406.4 253 83.4
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 2.9e-111 405.6 260 83.1
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 2.9e-111 405.6 264 81.4
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 3.8e-111 405.2 253 83.4
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 3.8e-111 405.2 253 83.4
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 5.0e-111 404.8 274 78.1
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 5.0e-111 404.8 265 81.1
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 8.5e-111 404.1 260 81.9
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 8.5e-111 404.1 258 81.8
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 1.1e-110 403.7 261 82.8
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 1.1e-110 403.7 261 82.8
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 1.1e-110 403.7 261 82.8
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 1.1e-110 403.7 253 83.8
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 1.1e-110 403.7 254 83.1
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 1.4e-110 403.3 270 78.9
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 1.4e-110 403.3 260 82.7
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 1.9e-110 402.9 261 83.1
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 2.5e-110 402.5 261 82.0
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 4.2e-110 401.7 261 82.4
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 4.2e-110 401.7 257 85.6
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 4.2e-110 401.7 253 83.0
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 4.2e-110 401.7 258 82.2
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 5.5e-110 401.4 258 81.0
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 5.5e-110 401.4 261 79.7
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 9.4e-110 400.6 255 81.2
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 1.6e-109 399.8 241 86.7
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 1.6e-109 399.8 263 81.0
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 2.1e-109 399.4 265 80.0
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 2.1e-109 399.4 253 83.8
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 7.9e-109 397.5 263 80.6
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 1.4e-108 396.7 254 81.9
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 1.4e-108 396.7 254 81.9
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 3.0e-108 395.6 254 81.5
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 3.9e-108 395.2 254 81.5
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 3.9e-108 395.2 260 79.6
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 5.1e-108 394.8 254 81.1
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 1.1e-107 393.7 250 82.8
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 1.5e-107 393.3 263 80.2
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 2.2e-106 389.4 253 80.6
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 2.8e-106 389.0 249 81.9
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 3.1e-105 385.6 287 76.0
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 5.3e-105 384.8 249 81.1
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 1.6e-104 383.3 261 77.8
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 1.7e-103 379.8 225 90.2
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 2.2e-103 379.4 261 76.2
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 3.8e-103 378.6 225 89.3
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 1.2e-101 373.6 238 84.0
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.6e-101 373.2 286 73.8
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 2.3e-100 369.4 264 72.3
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 2.0e-99 366.3 257 75.9
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.3e-99 365.5 254 73.6
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 7.5e-99 364.4 256 74.2
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 4.8e-98 361.7 259 71.8
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 3.1e-97 359.0 256 72.3
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.1e-97 358.6 260 69.6
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 4.1e-97 358.6 260 75.8
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 7.0e-89 331.3 260 68.1
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 1.3e-87 327.0 252 72.2
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 2.7e-85 319.3 194 87.1
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 3.0e-84 315.8 212 81.1
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-66 256.9 254 53.5
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.7e-66 255.8 177 75.7
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 8.3e-66 254.6 160 83.8
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 4.6e-64 248.8 265 57.4
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 1.2e-61 240.7 152 84.9
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.6e-56 223.8 154 79.9
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.0e-51 206.8 235 45.5
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 4.1e-49 199.1 246 42.7
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.7e-48 196.4 269 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.0e-44 182.6 239 43.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.5e-35 152.5 95 78.9
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.8e-34 149.4 96 83.3
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 4.6e-32 142.5 240 35.4
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 4.3e-30 136.0 77 94.8
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 1.2e-27 127.9 117 61.5
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.5e-27 127.5 75 90.7
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 1.8e-23 114.0 242 34.3
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 9.6e-22 108.2 100 62.0
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 5.0e-10 69.3 51 72.5


User provided reference genes

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