Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.3e-124 448.4 220 100.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.7e-70 269.2 221 61.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 6.3e-67 258.1 211 60.7
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.7e-65 251.1 204 59.8
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 6.5e-64 248.1 211 59.2
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.1e-63 247.3 216 57.4
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.4e-63 246.9 179 72.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.2e-63 245.7 211 57.8
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.2e-63 245.7 210 57.6
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.2e-63 245.7 222 58.6
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.2e-63 245.4 225 54.2
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.2e-63 245.4 211 57.3
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.2e-62 243.8 215 58.1
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.7e-62 242.7 223 55.6
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.6e-62 242.3 222 57.2
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.8e-61 240.0 212 57.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.3e-61 239.6 224 53.6
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.0e-61 239.2 214 56.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 3.0e-61 239.2 223 52.9
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.9e-61 238.8 220 55.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.1e-61 238.4 210 55.2
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 5.1e-61 238.4 223 53.8
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 6.7e-61 238.0 223 51.6
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 6.7e-61 238.0 212 54.7
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 6.7e-61 238.0 222 56.8
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 8.8e-61 237.7 224 53.6
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 8.8e-61 237.7 218 55.5
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.1e-60 237.3 196 57.7
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-60 236.9 220 53.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.5e-60 236.9 210 54.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.0e-60 236.5 189 61.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.0e-60 236.5 212 54.7
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.3e-60 235.7 210 55.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 4.4e-60 235.3 202 56.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 5.7e-60 235.0 212 54.7
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 7.4e-60 234.6 229 52.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 9.7e-60 234.2 222 52.3
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 9.7e-60 234.2 218 55.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.3e-59 233.8 202 55.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.3e-59 233.8 218 52.8
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.2e-59 233.0 221 52.9
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.8e-59 232.6 219 52.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.8e-59 231.9 202 56.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 4.8e-59 231.9 247 49.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 8.2e-59 231.1 214 55.6
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 8.2e-59 231.1 218 53.7
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-58 230.7 210 54.3
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.8e-58 229.9 202 56.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.8e-58 229.9 220 51.8
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.8e-58 229.9 238 50.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.4e-58 229.6 214 54.7
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.4e-58 229.6 218 50.5
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.4e-58 229.6 211 55.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.1e-58 229.2 213 53.1
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.3e-58 228.4 204 53.9
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.9e-58 228.0 202 55.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.9e-58 228.0 202 54.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.9e-58 228.0 202 55.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 9.1e-58 227.6 192 54.7
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 9.1e-58 227.6 218 52.3
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 9.1e-58 227.6 218 53.2
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.2e-57 227.3 221 51.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.5e-57 226.9 210 51.9
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-57 226.5 214 54.7
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.6e-57 226.1 204 52.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 2.6e-57 226.1 212 54.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.5e-57 225.3 211 53.6
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.5e-57 225.3 221 53.8
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.9e-57 224.9 209 56.0
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.0e-56 224.2 211 53.6
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-56 223.8 214 53.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.3e-56 223.8 221 51.6
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.7e-56 223.4 217 52.1
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 8.5e-56 221.1 221 48.0
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.9e-55 219.9 221 49.3
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.2e-55 219.2 215 52.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 9.4e-55 217.6 222 49.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.2e-54 217.2 204 51.0
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.1e-54 216.5 259 44.8
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.7e-54 216.1 204 51.0
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 3.6e-54 215.7 221 51.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.0e-53 212.6 215 50.7
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 3.9e-53 212.2 222 49.5
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 5.2e-53 211.8 197 52.8
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 5.2e-53 211.8 221 46.6
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 6.7e-53 211.5 198 53.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.1e-52 210.7 213 51.6
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.0e-52 209.9 220 46.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.0e-52 209.9 219 51.1
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.0e-52 209.9 221 46.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.6e-52 209.5 220 47.3
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.4e-52 208.8 203 51.7
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 4.4e-52 208.8 196 50.5
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 5.7e-52 208.4 217 50.2
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.7e-52 208.4 214 50.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 7.4e-52 208.0 216 50.5
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 9.7e-52 207.6 208 51.0
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.3e-51 207.2 215 49.8
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.7e-51 206.8 185 52.4
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.2e-51 206.5 149 63.8
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.2e-51 206.5 227 48.5
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 8.2e-51 204.5 215 52.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-50 204.1 244 44.7
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.8e-50 203.4 221 47.1
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.1e-50 202.6 180 55.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.1e-50 202.6 231 47.6
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.1e-50 202.2 210 50.0
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 7.0e-50 201.4 221 46.6
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.0e-50 201.4 229 45.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.6e-49 199.5 202 46.5
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.5e-49 199.1 162 66.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.5e-49 199.1 201 53.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 7.7e-49 198.0 214 47.2
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.0e-48 197.6 217 46.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.3e-48 197.2 213 49.8
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.3e-48 197.2 213 49.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.2e-48 196.4 231 46.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 2.9e-48 196.1 228 45.2
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 3.8e-48 195.7 218 47.7
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 6.5e-48 194.9 214 46.7
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.5e-47 193.7 229 45.4
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.5e-47 193.7 216 46.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.9e-47 193.4 204 49.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 3.2e-47 192.6 197 46.2
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.2e-47 192.6 186 52.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.2e-47 192.2 227 45.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.6e-46 190.3 213 47.4
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.1e-46 189.9 202 47.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.7e-46 189.5 221 46.6
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.7e-46 188.7 217 45.2
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.0e-45 187.6 228 44.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.8e-45 186.8 222 45.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.8e-45 186.8 222 45.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.8e-45 186.8 222 45.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.8e-45 186.8 227 45.4
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.2e-45 185.3 216 45.8
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 5.2e-45 185.3 197 45.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.6e-44 183.0 219 46.1
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.6e-44 183.0 207 47.8
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.3e-44 182.6 216 45.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 5.7e-44 181.8 139 61.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-43 180.6 219 45.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.8e-43 179.5 188 44.7
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.7e-43 179.1 216 44.0
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.7e-43 179.1 222 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.8e-43 178.7 212 43.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 6.3e-43 178.3 214 44.4
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 5.3e-42 175.3 214 43.9
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.7e-41 172.9 244 39.3
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 7.7e-41 171.4 268 38.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.0e-40 171.0 204 47.1
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.3e-40 170.6 221 41.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.2e-36 157.5 213 43.2
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 3.4e-36 156.0 142 54.2
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.9e-32 142.9 138 53.6
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 5.0e-32 142.1 162 46.9
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-28 130.6 211 37.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.6e-28 129.8 216 38.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 7.5e-28 128.3 144 45.8
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.8e-27 126.3 130 52.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.6e-25 120.6 143 44.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.8e-24 115.9 144 45.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.6e-22 109.4 146 43.8
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 4.6e-17 92.4 78 60.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 5.0e-16 89.0 72 58.3
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 6.6e-16 88.6 111 44.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.6e-15 85.5 71 54.9
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 5.8e-12 75.5 78 42.3
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.7e-11 73.9 114 39.5
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-09 65.9 114 36.8
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.3e-07 59.7 78 42.3
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.2e-06 57.8 74 47.3
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.8e-06 56.6 77 45.5
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.1e-06 55.1 57 50.9
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.1e-06 55.1 69 46.4


User provided reference genes

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