Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G165 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.0e-38 162.9 81 100.0
ATR0594G151 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.6e-28 129.0 86 79.1
ATR0594G210 Amborella trichopoda HOM05D000056 ORTHO05D000019 4.4e-26 120.9 86 76.7
ATR0594G192 Amborella trichopoda HOM05D000056 ORTHO05D000019 7.0e-24 113.6 86 70.9
ATR0594G079 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.3e-22 109.4 86 69.8
ATR0582G101 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.0e-14 83.2 86 52.3
ATR0561G242 Amborella trichopoda HOM05D000056 ORTHO05D000019 8.6e-14 80.1 86 51.2
ATR0582G049 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.9e-13 79.0 83 50.6
ATR0594G166 Amborella trichopoda HOM05D000056 ORTHO05D000019 1.9e-13 79.0 65 63.1
ATR0582G238 Amborella trichopoda HOM05D000056 ORTHO05D000019 2.5e-13 78.6 83 50.6
ATR0582G170 Amborella trichopoda HOM05D000056 ORTHO05D000019 5.2e-11 70.9 86 46.5
ATR0582G366 Amborella trichopoda HOM05D000056 ORTHO05D000019 5.2e-11 70.9 83 42.2
Rhsim12G0117300 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.3e-09 66.2 81 42.0
Aqoxy5G03012 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 1.7e-09 65.9 81 42.0
Eucgr.K03612 Eucalyptus grandis HOM05D000056 ORTHO05D000019 2.2e-09 65.5 78 43.6
Thecc.01G234400 Theobroma cacao HOM05D000056 ORTHO05D000019 3.7e-09 64.7 81 40.7
unitig_22.g6368 Utricularia gibba HOM05D000056 ORTHO05D000019 3.7e-09 64.7 83 39.8
Medtr5g086260 Medicago truncatula HOM05D000056 ORTHO05D000019 4.9e-09 64.3 80 41.2
PSO339G3551 Papaver somniferum HOM05D000056 ORTHO05D000019 4.9e-09 64.3 84 40.5
Sabra03G0115700 Salix brachista HOM05D000056 ORTHO05D000019 6.4e-09 63.9 81 40.7
Eucgr.J01674 Eucalyptus grandis HOM05D000056 ORTHO05D000019 8.3e-09 63.5 76 43.4
Oeu022004.1 Olea europaea HOM05D000056 ORTHO05D000019 1.1e-08 63.2 81 39.5
Oeu064559.1 Olea europaea HOM05D000056 ORTHO05D000019 1.1e-08 63.2 81 39.5
Rhsim12G0118100 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.1e-08 63.2 81 39.5
Migut.K01212 Erythranthe guttata HOM05D000056 ORTHO05D000019 1.4e-08 62.8 82 37.8
Solyc05g006690.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 1.4e-08 62.8 81 39.5
Sopen05g002640 Solanum pennellii HOM05D000056 ORTHO05D000019 1.4e-08 62.8 81 39.5
Potri.003G159300 Populus trichocarpa HOM05D000056 ORTHO05D000019 1.9e-08 62.4 81 39.5
Gohir.D04G039700 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.4e-08 62.0 81 38.3
MD16G1130500 Malus domestica HOM05D000056 ORTHO05D000019 2.4e-08 62.0 81 39.5
PGR119G1826 Punica granatum HOM05D000056 ORTHO05D000019 2.4e-08 62.0 81 38.3
ATR0561G213 Amborella trichopoda HOM05D000056 ORTHO05D000019 3.2e-08 61.6 80 38.8
arahy.Tifrunner.gnm1.ann1.QC9T8W Arachis hypogaea HOM05D000056 ORTHO05D000019 3.2e-08 61.6 79 40.5
Eucgr.L01084 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.2e-08 61.6 86 38.4
Os11g0541600 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 3.2e-08 61.6 81 37.0
Rhsim12G0117000 Rhododendron simsii HOM05D000056 ORTHO05D000019 3.2e-08 61.6 81 39.5
arahy.Tifrunner.gnm1.ann1.SAF0ZU Arachis hypogaea HOM05D000056 ORTHO05D000019 4.1e-08 61.2 79 40.5
Gohir.A09G003400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 4.1e-08 61.2 82 37.8
Gorai.012G044700 Gossypium raimondii HOM05D000056 ORTHO05D000019 4.1e-08 61.2 81 38.3
PGSC0003DMG400022626 Solanum tuberosum HOM05D000056 ORTHO05D000019 4.1e-08 61.2 81 38.3
TWI18G0026 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 4.1e-08 61.2 83 38.6
Hma1.2p1_0738F.1_g211050 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 35.8
Nn3g16183 Nelumbo nucifera HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 38.3
Phvul.008G211000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 38.3
Prupe.1G210700 Prunus persica HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 37.0
Sabra03G0115800 Salix brachista HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 38.3
VMungo0647G2157 Vigna mungo HOM05D000056 ORTHO05D000019 5.4e-08 60.8 81 38.3
CiPaw.05G097300 Carya illinoinensis HOM05D000056 ORTHO05D000019 7.1e-08 60.5 79 39.2
Eucgr.J01692 Eucalyptus grandis HOM05D000056 ORTHO05D000019 7.1e-08 60.5 85 41.2
Glyma.02G271000 Glycine max HOM05D000056 ORTHO05D000019 7.1e-08 60.5 80 38.8
Gohir.D09G003120 Gossypium hirsutum HOM05D000056 ORTHO05D000019 7.1e-08 60.5 82 39.0
Gorai.006G003900 Gossypium raimondii HOM05D000056 ORTHO05D000019 7.1e-08 60.5 82 39.0
PSO384G1701 Papaver somniferum HOM05D000056 ORTHO05D000019 7.1e-08 60.5 84 39.3
Eucgr.J01708 Eucalyptus grandis HOM05D000056 ORTHO05D000019 9.2e-08 60.1 81 38.3
FAN07G0778 Fragaria x ananassa HOM05D000056 ORTHO05D000019 9.2e-08 60.1 81 38.3
Potri.003G159400 Populus trichocarpa HOM05D000056 ORTHO05D000019 9.2e-08 60.1 79 38.0
PGR119G1316 Punica granatum HOM05D000056 ORTHO05D000019 9.2e-08 60.1 83 37.3
TAR622G0654 Trochodendron aralioides HOM05D000056 ORTHO05D000019 9.2e-08 60.1 81 37.0
DCAR_002032 Daucus carota HOM05D000056 ORTHO05D000019 1.2e-07 59.7 81 38.3
PSO063G6556 Papaver somniferum HOM05D000056 ORTHO05D000019 1.2e-07 59.7 83 37.3
PSO135G0612 Papaver somniferum HOM05D000056 ORTHO05D000019 1.2e-07 59.7 84 40.5
Aqoxy5G03013 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 1.6e-07 59.3 81 40.7
Actinidia33988 Actinidia chinensis HOM05D000056 ORTHO05D000019 2.1e-07 58.9 81 34.6
CSS0025572 Camellia sinensis var. sinensis HOM05D000056 ORTHO05D000019 2.1e-07 58.9 83 34.9
CSS0049643 Camellia sinensis var. sinensis HOM05D000056 ORTHO05D000019 2.1e-07 58.9 83 34.9
FvH4_4g22070 Fragaria vesca HOM05D000056 ORTHO05D000019 2.1e-07 58.9 81 38.3
FAN12G2825 Fragaria x ananassa HOM05D000056 ORTHO05D000019 2.1e-07 58.9 81 38.3
MBI07_g24941_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 2.1e-07 58.9 78 38.5
Potri.001G071300 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.1e-07 58.9 81 38.3
ECA233G4851 Erigeron canadensis HOM05D000056 ORTHO05D000019 2.7e-07 58.5 78 38.5
Ciclev10005120m.g Citrus clementina HOM05D000056 ORTHO05D000019 3.5e-07 58.2 60 46.7
Lsat_1_v5_gn_8_32861 Lactuca sativa HOM05D000056 ORTHO05D000019 3.5e-07 58.2 77 37.7
Manes.03G151000 Manihot esculenta HOM05D000056 ORTHO05D000019 3.5e-07 58.2 82 39.0
Medtr5g087580 Medicago truncatula HOM05D000056 ORTHO05D000019 3.5e-07 58.2 81 37.0
PSO017G2738 Papaver somniferum HOM05D000056 ORTHO05D000019 3.5e-07 58.2 76 39.5
PSO724G0953 Papaver somniferum HOM05D000056 ORTHO05D000019 3.5e-07 58.2 84 39.3
PGR083G2203 Punica granatum HOM05D000056 ORTHO05D000019 3.5e-07 58.2 83 36.1
Eucgr.J01673 Eucalyptus grandis HOM05D000056 ORTHO05D000019 4.6e-07 57.8 83 34.9
MBI07_g11069_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 4.6e-07 57.8 85 37.6
Manes.03G150700 Manihot esculenta HOM05D000056 ORTHO05D000019 4.6e-07 57.8 82 40.2
Os11g0540600 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 4.6e-07 57.8 82 40.2
ATR0582G123 Amborella trichopoda HOM05D000056 ORTHO05D000019 6.0e-07 57.4 83 42.2
Cc08_g10470 Coffea canephora HOM05D000056 ORTHO05D000019 6.0e-07 57.4 81 38.3
Manes.08G098900 Manihot esculenta HOM05D000056 ORTHO05D000019 6.0e-07 57.4 83 34.9
PSO724G1384 Papaver somniferum HOM05D000056 ORTHO05D000019 6.0e-07 57.4 84 41.7
TWI18G0590 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 6.0e-07 57.4 81 35.8
Eucgr.J01682 Eucalyptus grandis HOM05D000056 ORTHO05D000019 7.8e-07 57.0 81 38.3
Medtr5g086340 Medicago truncatula HOM05D000056 ORTHO05D000019 7.8e-07 57.0 81 38.3
PSO421G0203 Papaver somniferum HOM05D000056 ORTHO05D000019 7.8e-07 57.0 84 38.1
PSO673G0029 Papaver somniferum HOM05D000056 ORTHO05D000019 7.8e-07 57.0 84 38.1
SalBow2G2264 Salvia bowleyana HOM05D000056 ORTHO05D000019 7.8e-07 57.0 82 35.4
vmacro04560 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 7.8e-07 57.0 82 36.6
Zm00001eb197750 Zea mays HOM05D000056 ORTHO05D000019 7.8e-07 57.0 81 37.0
Psat0s1041g0160 Pisum sativum HOM05D000056 ORTHO05D000019 1.0e-06 56.6 81 38.3
TPR.G14444 Trifolium pratense HOM05D000056 ORTHO05D000019 1.0e-06 56.6 81 33.3
Ciclev10005049m.g Citrus clementina HOM05D000056 ORTHO05D000019 1.3e-06 56.2 80 37.5
Duzib212G0224 Durio zibethinus HOM05D000056 ORTHO05D000019 1.3e-06 56.2 84 36.9
Eucgr.J01707 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.3e-06 56.2 80 36.2
Manes.03G151700 Manihot esculenta HOM05D000056 ORTHO05D000019 1.3e-06 56.2 82 39.0
RcHm_v2.0_Chr4g0428321 Rosa chinensis HOM05D000056 ORTHO05D000019 1.3e-06 56.2 81 34.6
Eucgr.J01683 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.7e-06 55.8 76 36.8
Gohir.A13G156200 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.7e-06 55.8 82 34.1
HanXRQChr08g0224751 Helianthus annuus HOM05D000056 ORTHO05D000019 1.7e-06 55.8 78 37.2
Potri.001G071400 Populus trichocarpa HOM05D000056 ORTHO05D000019 1.7e-06 55.8 81 35.8
Zm00001eb310380 Zea mays HOM05D000056 ORTHO05D000019 1.7e-06 55.8 81 34.6
Hma1.2p1_0144F.1_g064670 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 2.3e-06 55.5 84 36.9
Hma1.2p1_2712F.1_g327340 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 2.3e-06 55.5 84 36.9
Os11g0540800 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 2.3e-06 55.5 82 37.8
TPR.G31835 Trifolium pratense HOM05D000056 ORTHO05D000019 2.3e-06 55.5 81 37.0
TPR.G31839 Trifolium pratense HOM05D000056 ORTHO05D000019 2.3e-06 55.5 81 35.8
Ca_06122_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 3.0e-06 55.1 81 35.8
MBI19_g47658_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 3.0e-06 55.1 84 33.3
PSO210G0010 Papaver somniferum HOM05D000056 ORTHO05D000019 3.0e-06 55.1 81 35.8
PSO210G2510 Papaver somniferum HOM05D000056 ORTHO05D000019 3.0e-06 55.1 81 35.8
MSTRG.22391 Avicennia marina HOM05D000056 ORTHO05D000019 3.9e-06 54.7 82 35.4
Eucgr.J01419 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.9e-06 54.7 81 39.5
Eucgr.J01688 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.9e-06 54.7 81 37.0
Gohir.A13G159050 Gossypium hirsutum HOM05D000056 ORTHO05D000019 3.9e-06 54.7 58 44.8
Manes.03G151800 Manihot esculenta HOM05D000056 ORTHO05D000019 3.9e-06 54.7 82 36.6
Gohir.A13G156300 Gossypium hirsutum HOM05D000056 ORTHO05D000019 5.1e-06 54.3 57 42.1
HanXRQChr02g0044311 Helianthus annuus HOM05D000056 ORTHO05D000019 5.1e-06 54.3 84 38.1
Cfa021914 Carpinus fangiana HOM05D000056 ORTHO05D000019 6.6e-06 53.9 49 51.0
Manes.03G150900 Manihot esculenta HOM05D000056 ORTHO05D000019 6.6e-06 53.9 74 43.2
Os12g0480800 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 6.6e-06 53.9 85 36.5
Sabra01G0050200 Salix brachista HOM05D000056 ORTHO05D000019 6.6e-06 53.9 81 35.8
Atru.chr4.1782 Acer truncatum HOM05D000056 ORTHO05D000019 8.6e-06 53.5 51 47.1
Ciclev10004982m.g Citrus clementina HOM05D000056 ORTHO05D000019 8.6e-06 53.5 80 37.5
Ciclev10005001m.g Citrus clementina HOM05D000056 ORTHO05D000019 8.6e-06 53.5 50 48.0
Duzib212G0158 Durio zibethinus HOM05D000056 ORTHO05D000019 8.6e-06 53.5 59 49.2
Eucgr.L03390 Eucalyptus grandis HOM05D000056 ORTHO05D000019 8.6e-06 53.5 82 37.8
Gohir.D09G052972 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.6e-06 53.5 84 34.5
Gorai.006G055900 Gossypium raimondii HOM05D000056 ORTHO05D000019 8.6e-06 53.5 84 34.5
MBI18_g06818_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 8.6e-06 53.5 83 34.9
Manes.03G150600 Manihot esculenta HOM05D000056 ORTHO05D000019 8.6e-06 53.5 82 39.0
Medtr7g060260 Medicago truncatula HOM05D000056 ORTHO05D000019 8.6e-06 53.5 77 37.7
Oeu021192.1 Olea europaea HOM05D000056 ORTHO05D000019 8.6e-06 53.5 82 34.1
PSO210G6005 Papaver somniferum HOM05D000056 ORTHO05D000019 8.6e-06 53.5 81 35.8
TWI18G0324 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 8.6e-06 53.5 83 34.9


User provided reference genes

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