Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 2000.3 1013 100.0
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1173.7 1016 60.8
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1167.1 1023 59.8
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1160.6 1016 59.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1139.8 1016 59.0
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1138.3 1016 58.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1136.7 1014 57.9
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1134.0 1016 58.2
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1132.5 1016 58.1
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1131.7 1022 58.0
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1129.8 1019 58.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1129.4 1017 58.2
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1126.3 1004 58.2
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1125.5 1004 58.2
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1125.5 1016 57.4
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1121.3 1017 58.1
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1120.9 1017 57.6
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1119.4 1081 56.2
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1117.8 1017 57.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1116.7 1016 57.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1116.3 1016 58.5
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1114.4 997 58.2
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1111.7 1017 57.6
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1104.4 1017 57.4
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1098.2 1018 57.2
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1094.3 1006 57.5
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1094.0 1016 57.3
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1091.3 1016 56.8
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1085.1 998 57.2
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 6.9e-312 1073.9 1016 56.3
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 1.0e-310 1070.1 1015 55.1
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 1.0e-310 1070.1 1015 55.8
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 5.3e-310 1067.8 1020 56.8
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 1.2e-309 1066.6 1018 55.9
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 1.2e-309 1066.6 1066 54.7
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 2.6e-309 1065.4 1017 55.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 5.8e-309 1064.3 1017 55.9
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 2.9e-308 1062.0 1018 54.7
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 2.9e-308 1062.0 1084 53.4
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 3.8e-308 1061.6 1016 55.6
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 4.9e-308 1061.2 1012 55.5
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.9e-307 1059.3 1014 56.1
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 2.4e-307 1058.9 1018 54.7
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 2.4e-307 1058.9 1018 54.8
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 9.3e-307 1057.0 1019 55.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 1.2e-306 1056.6 1018 55.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 1.2e-306 1056.6 1020 55.7
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 1.6e-306 1056.2 1018 54.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 3.5e-306 1055.0 1018 55.2
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 4.6e-306 1054.7 1017 55.1
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 6.0e-306 1054.3 1018 54.8
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.0e-305 1053.5 1018 55.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.3e-305 1053.1 1016 55.5
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 2.3e-305 1052.4 1012 55.2
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 3.9e-305 1051.6 1022 55.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 5.1e-305 1051.2 1018 54.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 5.1e-305 1051.2 1015 55.8
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 1.5e-304 1049.7 1017 54.6
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 1.9e-304 1049.3 1018 54.6
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 1.9e-304 1049.3 1018 54.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.9e-304 1049.3 1016 55.5
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 4.3e-304 1048.1 1020 54.8
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 7.3e-304 1047.3 1021 56.0
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 2.1e-303 1045.8 1020 55.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 6.2e-303 1044.3 800 66.9
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 1.1e-302 1043.5 1017 54.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 1.8e-302 1042.7 1017 54.3
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 2.4e-302 1042.3 1022 54.8
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 1.5e-301 1039.6 1017 53.8
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 4.4e-301 1038.1 1015 55.0
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 7.6e-301 1037.3 1037 54.5
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 2.9e-300 1035.4 1018 53.9
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 6.4e-300 1034.2 1018 54.6
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.4e-299 1033.1 1015 54.8
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 1.9e-299 1032.7 1015 54.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.5e-296 1023.1 1023 53.9
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 1.1e-294 1016.9 1019 52.9
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 5.8e-293 1011.1 1017 52.9
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 9.9e-293 1010.4 1027 53.5
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 2.2e-292 1009.2 1015 53.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.9e-291 1006.1 992 55.0
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.0e-290 1001.1 1020 54.0
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 3.3e-288 995.3 1016 52.7
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 7.6e-285 984.2 779 64.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 2.9e-284 982.2 1022 52.2
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 3.4e-269 932.2 784 61.7
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.8e-263 912.5 978 51.2
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.0e-254 881.3 988 48.7
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.9e-252 875.9 684 64.2
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 1.7e-244 850.1 598 71.2
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.7e-242 842.0 618 68.9
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.3e-225 786.6 1015 45.5
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.2e-222 776.2 1035 44.2
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.8e-218 763.1 1037 43.4
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 3.7e-215 752.7 869 46.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.1e-195 688.0 1046 39.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.2e-194 684.5 817 46.4
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 9.9e-184 648.3 1033 38.4
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 4.9e-183 646.0 530 62.3
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.2e-182 642.9 508 62.6
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 7.1e-182 642.1 757 47.0
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 2.5e-163 580.5 1024 35.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.4e-161 574.7 457 64.1
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.7e-156 555.4 529 55.8
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.5e-155 554.7 576 52.8
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.4e-153 548.1 436 64.2
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.1e-134 485.3 535 50.1
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 4.0e-124 450.3 1026 31.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.7e-120 437.6 421 55.6
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-119 435.3 512 46.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.6e-109 400.6 510 44.9
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.7e-106 391.7 622 38.3
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.6e-104 385.2 237 78.5
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 3.3e-102 377.5 461 45.8
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.8e-100 371.7 258 72.5
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.4e-97 361.3 246 73.6
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.0e-87 329.3 528 39.2
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.6e-87 326.6 300 56.3
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-73 282.3 423 41.4
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 4.8e-61 240.7 459 36.2
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-58 231.1 312 42.9
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-56 224.6 391 39.6
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-55 221.5 393 37.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.0e-43 182.2 317 35.6
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 3.4e-43 181.4 754 27.1
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 5.9e-43 180.6 162 59.3
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 5.9e-43 180.6 162 59.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 5.9e-43 180.6 109 79.8
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 7.6e-43 180.3 314 35.0
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.0e-42 179.9 798 26.2
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.0e-42 177.6 316 35.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 7.2e-41 173.7 751 24.2
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-39 168.7 245 42.0
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.5e-33 148.7 494 28.5
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-32 146.4 392 32.1
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-31 143.3 490 27.8
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 8.2e-29 133.7 161 47.2
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 2.4e-28 132.1 120 59.2
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-28 132.1 316 32.0
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 5.5e-25 120.9 76 80.3
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 1.2e-24 119.8 121 57.0
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 6.3e-21 107.5 76 63.2
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 2.4e-20 105.5 157 40.8
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 4.1e-20 104.8 87 56.3
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 8.5e-18 97.1 61 78.7
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 2.0e-14 85.9 440 22.0
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 7.5e-14 84.0 151 34.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-12 79.7 51 64.7
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 5.3e-12 77.8 49 67.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 7.0e-12 77.4 106 43.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 2.2e-10 72.4 61 60.7
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 2.9e-10 72.0 46 67.4


User provided reference genes

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