Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G084 Amborella trichopoda HOM05D002537 ORTHO05D002751 3.3e-62 241.5 118 100.0
ATR0626G112 Amborella trichopoda HOM05D002537 ORTHO05D002751 2.5e-38 162.2 134 63.4
SEGI_15899 Sequoiadendron giganteum HOM05D002537 ORTHO05D002751 3.3e-14 82.0 110 45.5
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 9.0e-12 73.9 107 41.1
LjContig00470g0023601 Lotus japonicus HOM05D002537 ORTHO05D002751 4.5e-11 71.6 89 41.6
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 4.5e-11 71.6 130 34.6
Actinidia22118 Actinidia chinensis HOM05D002537 ORTHO05D002751 7.6e-11 70.9 111 36.0
Sabra03G0118500 Salix brachista HOM05D002537 ORTHO05D002751 7.6e-11 70.9 108 37.0
CiPaw.05G101900 Carya illinoinensis HOM05D002537 ORTHO05D002751 1.3e-10 70.1 142 30.3
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 1.3e-10 70.1 118 37.3
HPP92_023028 Vanilla planifolia HOM05D002537 ORTHO05D002751 1.3e-10 70.1 112 36.6
PSO017G5279 Papaver somniferum HOM05D002537 ORTHO05D002751 1.7e-10 69.7 132 34.8
PSO478G1702 Papaver somniferum HOM05D002537 ORTHO05D002751 1.7e-10 69.7 118 35.6
Prupe.1G216100 Prunus persica HOM05D002537 ORTHO05D002751 1.7e-10 69.7 132 37.1
Aqoxy5G03143 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 2.2e-10 69.3 123 35.0
CDE05G0009 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 2.2e-10 69.3 117 35.9
Potri.003G163000 Populus trichocarpa HOM05D002537 ORTHO05D002751 2.2e-10 69.3 108 37.0
PGR119G1955 Punica granatum HOM05D002537 ORTHO05D002751 2.2e-10 69.3 136 36.0
CDE05G3192 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 2.9e-10 68.9 117 35.9
Lj9C486T16 Lonicera japonica HOM05D002537 ORTHO05D002751 2.9e-10 68.9 114 39.5
Dinv13726 Davidia involucrata HOM05D002537 ORTHO05D002751 3.8e-10 68.6 114 36.8
Eucgr.B03553 Eucalyptus grandis HOM05D002537 ORTHO05D002751 3.8e-10 68.6 108 37.0
Lsat_1_v5_gn_4_1480 Lactuca sativa HOM05D002537 ORTHO05D002751 3.8e-10 68.6 108 38.0
Aa31LG9G13480 Aethionema arabicum HOM05D002537 ORTHO05D002751 4.9e-10 68.2 130 30.8
CiPaw.06G109100 Carya illinoinensis HOM05D002537 ORTHO05D002751 4.9e-10 68.2 141 33.3
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 4.9e-10 68.2 117 36.8
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 4.9e-10 68.2 117 36.8
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 4.9e-10 68.2 117 36.8
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 4.9e-10 68.2 117 36.8
MBI10_g39274_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 4.9e-10 68.2 117 35.0
THA.LOC104814208 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 4.9e-10 68.2 121 35.5
Actinidia09597 Actinidia chinensis HOM05D002537 ORTHO05D002751 6.4e-10 67.8 114 34.2
Cfa009445 Carpinus fangiana HOM05D002537 ORTHO05D002751 6.4e-10 67.8 142 31.0
Haze_12497 Corylus avellana HOM05D002537 ORTHO05D002751 6.4e-10 67.8 142 31.0
THA.LOC104812603 Tarenaya hassleriana HOM05D002537 ORTHO05D002751 6.4e-10 67.8 115 36.5
Manes.09G187700 Manihot esculenta HOM05D002537 ORTHO05D002751 1.1e-09 67.0 114 35.1
Peaxi162Scf00128g01777 Petunia axillaris HOM05D002537 ORTHO05D002751 1.1e-09 67.0 133 32.3
Dinv01472 Davidia involucrata HOM05D002537 ORTHO05D002751 1.4e-09 66.6 114 34.2
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 1.4e-09 66.6 136 33.8
TAR475G0008 Trochodendron aralioides HOM05D002537 ORTHO05D002751 1.4e-09 66.6 112 34.8
CSS0022489 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.9e-09 66.2 125 32.0
CSS0047452 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.9e-09 66.2 125 32.0
Manes.08G101700 Manihot esculenta HOM05D002537 ORTHO05D002751 1.9e-09 66.2 114 34.2
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.9e-09 66.2 114 34.2
TAR371G1050 Trochodendron aralioides HOM05D002537 ORTHO05D002751 1.9e-09 66.2 110 35.5
Atru.chr12.1406 Acer truncatum HOM05D002537 ORTHO05D002751 2.4e-09 65.9 121 34.7
Ciclev10005329m.g Citrus clementina HOM05D002537 ORTHO05D002751 2.4e-09 65.9 119 34.5
Lj1g0023956 Lotus japonicus HOM05D002537 ORTHO05D002751 2.4e-09 65.9 143 34.3
SHI04124 Sapria himalayana HOM05D002537 ORTHO05D002751 2.4e-09 65.9 137 35.8
Gorai.002G021600 Gossypium raimondii HOM05D002537 ORTHO05D002751 3.2e-09 65.5 114 33.3
HanXRQChr12g0384721 Helianthus annuus HOM05D002537 ORTHO05D002751 3.2e-09 65.5 110 34.5
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 3.2e-09 65.5 112 34.8
MD16G1130200 Malus domestica HOM05D002537 ORTHO05D002751 3.2e-09 65.5 133 34.6
Hund25508 Selenicereus undatus HOM05D002537 ORTHO05D002751 3.2e-09 65.5 108 36.1
Sc11g0000120 Simmondsia chinensis HOM05D002537 ORTHO05D002751 3.2e-09 65.5 114 32.5
CSS0033009 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.2e-09 65.1 110 34.5
Dinv19305 Davidia involucrata HOM05D002537 ORTHO05D002751 4.2e-09 65.1 114 33.3
Lj6A837G33 Lonicera japonica HOM05D002537 ORTHO05D002751 4.2e-09 65.1 115 33.0
Potri.001G066900 Populus trichocarpa HOM05D002537 ORTHO05D002751 4.2e-09 65.1 114 34.2
QL03p049540 Quercus lobata HOM05D002537 ORTHO05D002751 4.2e-09 65.1 141 33.3
Rhsim12G0017600 Rhododendron simsii HOM05D002537 ORTHO05D002751 4.2e-09 65.1 114 35.1
Cpa.g.sc2461.1 Carica papaya HOM05D002537 ORTHO05D002751 5.5e-09 64.7 114 34.2
Cc11_g15060 Coffea canephora HOM05D002537 ORTHO05D002751 5.5e-09 64.7 136 33.1
COL.COLO4_21770 Corchorus olitorius HOM05D002537 ORTHO05D002751 5.5e-09 64.7 144 31.2
ECA246G2368 Erigeron canadensis HOM05D002537 ORTHO05D002751 5.5e-09 64.7 112 32.1
Duzib052G0845 Durio zibethinus HOM05D002537 ORTHO05D002751 7.1e-09 64.3 114 33.3
Gohir.D01G019300 Gossypium hirsutum HOM05D002537 ORTHO05D002751 7.1e-09 64.3 114 33.3
ATR0582G285 Amborella trichopoda HOM05D002537 ORTHO05D002751 9.3e-09 63.9 117 33.3
BcaC02g07801 Brassica carinata HOM05D002537 ORTHO05D002751 9.3e-09 63.9 102 35.3
CSS0030889 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 9.3e-09 63.9 121 34.7
Ca_16813_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 9.3e-09 63.9 133 31.6
MELO3C022356.2 Cucumis melo HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 35.1
CsaV3_6G007760 Cucumis sativus L. HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 35.1
Gohir.A01G020800 Gossypium hirsutum HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 33.3
Lalb_Chr02g0144711 Lupinus albus HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 33.3
MBI07_g41899_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 9.3e-09 63.9 112 35.7
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 34.2
Sabra01G0046500 Salix brachista HOM05D002537 ORTHO05D002751 9.3e-09 63.9 114 33.3
Solyc04g045430.4 Solanum lycopersicum HOM05D002537 ORTHO05D002751 9.3e-09 63.9 132 32.6
Sopen04g017230 Solanum pennellii HOM05D002537 ORTHO05D002751 9.3e-09 63.9 132 32.6
TAR622G0948 Trochodendron aralioides HOM05D002537 ORTHO05D002751 9.3e-09 63.9 108 34.3
unitig_8.g3117 Utricularia gibba HOM05D002537 ORTHO05D002751 9.3e-09 63.9 123 35.0
TAR374G1592 Trochodendron aralioides HOM05D002537 ORTHO05D002751 1.2e-08 63.5 112 33.0
EL10Ac6g13606 Beta vulgaris HOM05D002537 ORTHO05D002751 1.6e-08 63.2 117 34.2
ClCG06G001740 Citrullus lanatus HOM05D002537 ORTHO05D002751 1.6e-08 63.2 114 34.2
Duzib132G0792 Durio zibethinus HOM05D002537 ORTHO05D002751 1.6e-08 63.2 140 30.7
TWI36G0118 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.6e-08 63.2 114 33.3
AL4G29220 Arabidopsis lyrata HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
AT2G33550 Arabidopsis thaliana HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
A04p25830 Brassica napus HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
C04p63060 Brassica napus HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
BolC4t27781H Brassica oleracea HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
BraA04t18085Z Brassica rapa HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
Carub.0004s1518 Capsella rubella HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
CARHR127560 Cardamine hirsuta HOM05D002537 ORTHO05D002751 2.1e-08 62.8 119 31.1
Psat7g039360 Pisum sativum HOM05D002537 ORTHO05D002751 2.1e-08 62.8 139 33.1
TPR.G40627 Trifolium pratense HOM05D002537 ORTHO05D002751 2.1e-08 62.8 111 34.2
Ah.02g131450 Amaranthus hybridus HOM05D002537 ORTHO05D002751 2.7e-08 62.4 113 32.7
MSTRG.457 Avicennia marina HOM05D002537 ORTHO05D002751 2.7e-08 62.4 132 30.3
BcaC02g11439 Brassica carinata HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
A05p11980 Brassica napus HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
C04p15530 Brassica napus HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
BolC4t23124H Brassica oleracea HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
BraA05t20141Z Brassica rapa HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
Cc00_g33380 Coffea canephora HOM05D002537 ORTHO05D002751 2.7e-08 62.4 111 34.2
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 2.7e-08 62.4 133 32.3
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 2.7e-08 62.4 133 32.3
Migut.K01061 Erythranthe guttata HOM05D002537 ORTHO05D002751 2.7e-08 62.4 113 33.6
Thhalv10016974m.g Eutrema salsugineum HOM05D002537 ORTHO05D002751 2.7e-08 62.4 119 31.1
Hma1.2p1_0577F.1_g182310 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 2.7e-08 62.4 114 34.2
Medtr7g020870 Medicago truncatula HOM05D002537 ORTHO05D002751 2.7e-08 62.4 139 33.8
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 2.7e-08 62.4 118 33.1
PGSC0003DMG400037473 Solanum tuberosum HOM05D002537 ORTHO05D002751 2.7e-08 62.4 137 32.1
Ca_07076_v3 Cicer arietinum L. HOM05D002537 ORTHO05D002751 3.5e-08 62.0 111 36.9
HanXRQChr05g0155411 Helianthus annuus HOM05D002537 ORTHO05D002751 3.5e-08 62.0 142 30.3
Hma1.2p1_0787F.1_g217860 Hydrangea macrophylla HOM05D002537 ORTHO05D002751 3.5e-08 62.0 138 31.2
Oeu058895.1 Olea europaea HOM05D002537 ORTHO05D002751 3.5e-08 62.0 134 31.3
Psat3g190160 Pisum sativum HOM05D002537 ORTHO05D002751 3.5e-08 62.0 139 33.8
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 3.5e-08 62.0 114 34.2
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 4.6e-08 61.6 112 33.9
Glyma.08G257500 Glycine max HOM05D002537 ORTHO05D002751 4.6e-08 61.6 105 36.2
SGA_v2.0_scaffold40G15678 Striga asiatica HOM05D002537 ORTHO05D002751 4.6e-08 61.6 111 34.2
BcaB02g10573 Brassica carinata HOM05D002537 ORTHO05D002751 6.0e-08 61.2 119 31.1
Glyma.10G298700 Glycine max HOM05D002537 ORTHO05D002751 6.0e-08 61.2 114 31.6
Sed0006357 Sechium edule HOM05D002537 ORTHO05D002751 6.0e-08 61.2 140 32.1
Thecc.02G193200 Theobroma cacao HOM05D002537 ORTHO05D002751 6.0e-08 61.2 144 29.2
Lalb_Chr10g0092211 Lupinus albus HOM05D002537 ORTHO05D002751 7.9e-08 60.8 111 34.2
SalBow2G0780 Salvia bowleyana HOM05D002537 ORTHO05D002751 7.9e-08 60.8 113 32.7
Glyma.18G281800 Glycine max HOM05D002537 ORTHO05D002751 1.0e-07 60.5 105 36.2
PGSC0003DMG400037364 Solanum tuberosum HOM05D002537 ORTHO05D002751 1.0e-07 60.5 113 35.4
HanXRQChr16g0529331 Helianthus annuus HOM05D002537 ORTHO05D002751 1.3e-07 60.1 142 29.6
VMungo0720G0377 Vigna mungo HOM05D002537 ORTHO05D002751 1.3e-07 60.1 114 30.7
BcaB06g28695 Brassica carinata HOM05D002537 ORTHO05D002751 1.8e-07 59.7 140 29.3
BcaB06g28696 Brassica carinata HOM05D002537 ORTHO05D002751 1.8e-07 59.7 140 29.3
BcaC02g07800 Brassica carinata HOM05D002537 ORTHO05D002751 1.8e-07 59.7 113 31.9
Cc00_g33880 Coffea canephora HOM05D002537 ORTHO05D002751 1.8e-07 59.7 111 31.5
Migut.D01185 Erythranthe guttata HOM05D002537 ORTHO05D002751 1.8e-07 59.7 133 34.6
Glyma.20G249900 Glycine max HOM05D002537 ORTHO05D002751 1.8e-07 59.7 114 31.6
Sp4g15890 Schrenkiella parvula HOM05D002537 ORTHO05D002751 1.8e-07 59.7 140 27.1
unitig_22.g6378 Utricularia gibba HOM05D002537 ORTHO05D002751 1.8e-07 59.7 123 32.5
VMungo1383G0533 Vigna mungo HOM05D002537 ORTHO05D002751 1.8e-07 59.7 107 36.4
AUR62028844 Chenopodium quinoa HOM05D002537 ORTHO05D002751 2.3e-07 59.3 115 34.8
Nitab4.5_0010249g0020 Nicotiana tabacum HOM05D002537 ORTHO05D002751 2.3e-07 59.3 141 30.5
Nitab4.5_0000976g0050 Nicotiana tabacum HOM05D002537 ORTHO05D002751 3.0e-07 58.9 138 31.9
TWI18G1224 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 3.0e-07 58.9 135 29.6
Phvul.007G000400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 3.9e-07 58.5 112 31.2
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 3.9e-07 58.5 145 29.7
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 3.9e-07 58.5 114 34.2
CDE02G2776 Ceratophyllum demersum HOM05D002537 ORTHO05D002751 5.1e-07 58.2 109 33.0
ECA234G1825 Erigeron canadensis HOM05D002537 ORTHO05D002751 6.7e-07 57.8 118 31.4
FAN04G1977 Fragaria x ananassa HOM05D002537 ORTHO05D002751 6.7e-07 57.8 141 32.6
MD06G1131400 Malus domestica HOM05D002537 ORTHO05D002751 6.7e-07 57.8 118 33.1
Medtr8g100130 Medicago truncatula HOM05D002537 ORTHO05D002751 6.7e-07 57.8 142 30.3
Potri.015G105800 Populus trichocarpa HOM05D002537 ORTHO05D002751 6.7e-07 57.8 138 32.6
Prupe.5G142400 Prunus persica HOM05D002537 ORTHO05D002751 6.7e-07 57.8 108 35.2
Phvul.008G019400 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 8.7e-07 57.4 105 36.2
PGSC0003DMG400014176 Solanum tuberosum HOM05D002537 ORTHO05D002751 8.7e-07 57.4 112 32.1
GSVIVG01008644001 Vitis vinifera HOM05D002537 ORTHO05D002751 8.7e-07 57.4 111 33.3
Ciclev10033491m.g Citrus clementina HOM05D002537 ORTHO05D002751 1.1e-06 57.0 107 30.8
DCAR_021402 Daucus carota HOM05D002537 ORTHO05D002751 1.1e-06 57.0 112 31.2
Lalb_Chr07g0183801 Lupinus albus HOM05D002537 ORTHO05D002751 1.1e-06 57.0 111 32.4
Lalb_Chr12g0202491 Lupinus albus HOM05D002537 ORTHO05D002751 1.1e-06 57.0 118 31.4
Peaxi162Scf00314g00642 Petunia axillaris HOM05D002537 ORTHO05D002751 1.1e-06 57.0 140 29.3
PGSC0003DMG400037032 Solanum tuberosum HOM05D002537 ORTHO05D002751 1.1e-06 57.0 137 30.7
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 1.1e-06 57.0 121 33.1
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 1.1e-06 57.0 134 29.9
Glyma.08G007800 Glycine max HOM05D002537 ORTHO05D002751 1.5e-06 56.6 118 33.1
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 1.5e-06 56.6 140 31.4
Sopen03g037140 Solanum pennellii HOM05D002537 ORTHO05D002751 1.9e-06 56.2 112 32.1
CAN.G843.13 Capsicum annuum HOM05D002537 ORTHO05D002751 2.5e-06 55.8 112 31.2
Lalb_Chr04g0258121 Lupinus albus HOM05D002537 ORTHO05D002751 2.5e-06 55.8 107 34.6
FvH4_5g09440 Fragaria vesca HOM05D002537 ORTHO05D002751 3.3e-06 55.5 148 29.7
FAN18G1947 Fragaria x ananassa HOM05D002537 ORTHO05D002751 3.3e-06 55.5 148 29.7
FAN13G0340 Fragaria x ananassa HOM05D002537 ORTHO05D002751 4.3e-06 55.1 148 30.4
Glyma.05G200400 Glycine max HOM05D002537 ORTHO05D002751 4.3e-06 55.1 118 31.4
MD14G1147800 Malus domestica HOM05D002537 ORTHO05D002751 4.3e-06 55.1 108 33.3
QL10p000562 Quercus lobata HOM05D002537 ORTHO05D002751 4.3e-06 55.1 107 31.8
SalBow1G7353 Salvia bowleyana HOM05D002537 ORTHO05D002751 4.3e-06 55.1 130 28.5
Phvul.002G281800 Phaseolus vulgaris HOM05D002537 ORTHO05D002751 5.6e-06 54.7 111 33.3
Oeu013658.5 Olea europaea HOM05D002537 ORTHO05D002751 7.4e-06 54.3 113 31.9
PGR102G0822 Punica granatum HOM05D002537 ORTHO05D002751 7.4e-06 54.3 121 31.4
Manes.06G126500 Manihot esculenta HOM05D002537 ORTHO05D002751 9.6e-06 53.9 112 33.9
Sabra15G0126000 Salix brachista HOM05D002537 ORTHO05D002751 9.6e-06 53.9 131 29.0
Solyc03g118230.3 Solanum lycopersicum HOM05D002537 ORTHO05D002751 9.6e-06 53.9 135 28.9
VMungo0251G0975 Vigna mungo HOM05D002537 ORTHO05D002751 9.6e-06 53.9 111 32.4


User provided reference genes

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