Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.7e-54 214.5 102 100.0
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.0e-40 167.9 87 90.8
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 6.8e-16 87.4 100 46.0
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-15 85.5 100 46.0
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.4e-15 85.1 101 45.5
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 5.8e-15 84.3 76 56.6
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 5.8e-15 84.3 93 49.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 7.5e-15 84.0 103 46.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.3e-14 83.2 100 46.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.3e-14 83.2 103 47.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.2e-14 82.4 98 38.8
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.9e-14 82.0 100 42.0
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 4.9e-14 81.3 98 41.8
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.9e-14 81.3 98 39.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.4e-14 80.9 100 43.0
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 8.3e-14 80.5 100 43.0
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.1e-13 80.1 78 56.4
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.4e-13 79.7 96 42.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.4e-13 79.7 80 52.5
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.4e-13 79.7 100 43.0
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.4e-13 79.7 100 44.0
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.2e-13 78.6 67 59.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 9.2e-13 77.0 78 53.8
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 9.2e-13 77.0 101 40.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 9.2e-13 77.0 99 43.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.2e-12 76.6 100 42.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.2e-12 76.6 69 55.1
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-12 76.3 101 45.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.6e-12 76.3 101 42.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.6e-12 76.3 83 49.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.6e-12 76.3 69 55.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-12 76.3 100 42.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.6e-12 76.3 80 48.8
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.0e-12 75.9 98 40.8
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.5e-12 75.1 92 44.6
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 4.6e-12 74.7 80 51.2
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 4.6e-12 74.7 98 38.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.6e-12 74.7 103 41.7
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.6e-12 74.7 100 41.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.6e-12 74.7 100 41.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 6.0e-12 74.3 81 49.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 6.0e-12 74.3 98 44.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.0e-11 73.6 103 40.8
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 3.0e-11 72.0 78 50.0
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 5.0e-11 71.2 78 55.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.0e-11 71.2 86 44.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.6e-11 70.9 97 38.1
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 8.6e-11 70.5 96 37.5
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 8.6e-11 70.5 69 55.1
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 8.6e-11 70.5 67 52.2
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.5e-10 69.7 66 54.5
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.9e-10 69.3 67 52.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.9e-10 69.3 78 50.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.3e-10 68.6 98 36.7
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 4.3e-10 68.2 80 43.8
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.3e-10 68.2 80 45.0
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.6e-10 67.8 94 40.4
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.6e-10 67.8 80 45.0
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 7.3e-10 67.4 101 37.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 9.5e-10 67.0 101 37.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 9.5e-10 67.0 98 35.7
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-09 66.6 70 45.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.2e-09 66.6 70 45.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.2e-09 66.6 74 47.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.6e-09 66.2 69 49.3
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.1e-09 65.9 73 47.9
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 2.8e-09 65.5 127 33.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.6e-09 65.1 78 46.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 4.7e-09 64.7 69 49.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.2e-09 64.3 96 35.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 6.2e-09 64.3 58 58.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 8.0e-09 63.9 64 46.9
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.4e-08 63.2 70 44.3
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.4e-08 63.2 70 44.3
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.4e-08 63.2 92 40.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.8e-08 62.8 56 50.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 2.3e-08 62.4 90 41.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.3e-08 62.4 90 41.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.0e-08 61.6 48 56.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.0e-08 61.6 110 36.4
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.2e-07 60.1 69 49.3
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.5e-07 59.7 55 54.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.5e-07 59.7 100 40.0
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.5e-07 59.7 90 40.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 5.8e-07 57.8 106 40.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.3e-06 56.6 80 41.2
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.7e-06 56.2 82 40.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.2e-06 55.8 94 34.0
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 4.9e-06 54.7 96 37.5
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 4.9e-06 54.7 125 31.2
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 8.3e-06 53.9 75 41.3


User provided reference genes

Program Settings