Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0594G023 Amborella trichopoda HOM05D006858 ORTHO05D026559 3.9e-78 294.7 143 100.0
ATR0594G223 Amborella trichopoda HOM05D006858 ORTHO05D026559 8.2e-76 287.0 143 97.9
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 2.2e-60 235.7 137 86.1
Lj2E1141T3 Lonicera japonica HOM05D007291 ORTHO05D026559 4.4e-13 78.6 103 40.8
VMungo1215G0516 Vigna mungo HOM05D007291 ORTHO05D026559 3.7e-12 75.5 103 35.9
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 4.9e-12 75.1 107 35.5
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 1.1e-11 73.9 107 33.6
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 2.7e-10 69.3 89 38.2
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 3.5e-10 68.9 108 35.2
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 1.0e-09 67.4 93 36.6
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.0e-09 67.4 90 34.4
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 1.3e-09 67.0 99 31.3
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 3.0e-09 65.9 81 38.3
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 6.6e-09 64.7 86 37.2
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 1.1e-08 63.9 91 31.9
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 1.1e-08 63.9 106 29.2
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 1.5e-08 63.5 73 35.6
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 1.9e-08 63.2 71 38.0
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 1.9e-08 63.2 71 35.2
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 2.5e-08 62.8 93 35.5
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 3.3e-08 62.4 121 25.6
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 3.3e-08 62.4 73 32.9
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 4.3e-08 62.0 71 38.0
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 4.3e-08 62.0 77 33.8
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 5.6e-08 61.6 71 39.4
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 7.3e-08 61.2 71 36.6
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 7.3e-08 61.2 93 34.4
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 9.5e-08 60.8 99 34.3
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 9.5e-08 60.8 73 30.1
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.2e-07 60.5 90 28.9
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.2e-07 60.5 90 28.9
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 1.2e-07 60.5 122 30.3
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.2e-07 60.5 91 28.6
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 1.2e-07 60.5 94 34.0
Sc10g0008050 Simmondsia chinensis HOM05D000424 ORTHO05D000355 1.2e-07 60.5 81 33.3
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 1.6e-07 60.1 124 29.0
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 1.6e-07 60.1 71 35.2
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 2.1e-07 59.7 73 34.2
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 2.1e-07 59.7 73 34.2
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.1e-07 59.7 71 35.2
Medtr1g037080 Medicago truncatula HOM05D007291 ORTHO05D009038 2.1e-07 59.7 81 38.3
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 2.1e-07 59.7 91 29.7
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 2.1e-07 59.7 110 30.0
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 2.8e-07 59.3 93 30.1
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 2.8e-07 59.3 71 36.6
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 3.6e-07 58.9 71 35.2
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.6e-07 58.9 71 35.2
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.6e-07 58.9 71 35.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 3.6e-07 58.9 141 27.7
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 4.7e-07 58.5 73 34.2
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 4.7e-07 58.5 73 34.2
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 4.7e-07 58.5 145 27.6
RcHm_v2.0_Chr1g0346001 Rosa chinensis HOM05D000300 ORTHO05D000383 4.7e-07 58.5 116 31.0
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 4.7e-07 58.5 140 29.3
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 6.2e-07 58.2 78 30.8
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 6.2e-07 58.2 77 31.2
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 8.1e-07 57.8 73 31.5
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 8.1e-07 57.8 71 33.8
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 8.1e-07 57.8 73 34.2
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 8.1e-07 57.8 90 31.1
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 8.1e-07 57.8 134 26.9
Rhsim06G0202600 Rhododendron simsii HOM05D000424 ORTHO05D000355 8.1e-07 57.8 120 25.8
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 8.1e-07 57.8 81 37.0
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 8.1e-07 57.8 87 31.0
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 8.1e-07 57.8 93 28.0
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 1.1e-06 57.4 68 35.3
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 1.1e-06 57.4 93 26.9
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 1.1e-06 57.4 73 32.9
Sabra14G0035700 Salix brachista HOM05D000300 ORTHO05D000383 1.1e-06 57.4 116 31.0
FAN10G1019 Fragaria x ananassa HOM05D000300 ORTHO05D000383 1.4e-06 57.0 116 31.9
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 1.4e-06 57.0 111 27.9
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 1.4e-06 57.0 78 29.5
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 1.4e-06 57.0 71 32.4
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.4e-06 57.0 73 32.9
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 1.4e-06 57.0 71 32.4
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 1.8e-06 56.6 87 32.2
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.8e-06 56.6 73 30.1
Potri.014G050300 Populus trichocarpa HOM05D000300 ORTHO05D000383 1.8e-06 56.6 116 30.2
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 1.8e-06 56.6 110 30.0
ATR0322G078 Amborella trichopoda HOM05D000891 ORTHO05D000761 2.4e-06 56.2 122 31.1
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 2.4e-06 56.2 91 30.8
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-06 56.2 94 27.7
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 2.4e-06 56.2 94 27.7
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 2.4e-06 56.2 113 27.4
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 2.4e-06 56.2 71 31.0
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.4e-06 56.2 78 30.8
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 2.4e-06 56.2 73 32.9
PGR119G1066 Punica granatum HOM05D000855 ORTHO05D000003 2.4e-06 56.2 76 35.5
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 2.4e-06 56.2 109 28.4
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 2.4e-06 56.2 113 29.2
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 3.1e-06 55.8 91 28.6
MBI18_g10377_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 3.1e-06 55.8 118 28.0
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 3.1e-06 55.8 90 30.0
Sabra02G0108500 Salix brachista HOM05D000300 ORTHO05D000383 3.1e-06 55.8 116 30.2
Sabra14G0037800 Salix brachista HOM05D000300 ORTHO05D000383 3.1e-06 55.8 116 30.2
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 3.1e-06 55.8 137 25.5
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 3.1e-06 55.8 85 29.4
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 4.0e-06 55.5 91 29.7
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 4.0e-06 55.5 106 28.3
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 5.2e-06 55.1 94 29.8
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 5.2e-06 55.1 91 27.5
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 5.2e-06 55.1 91 27.5
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 5.2e-06 55.1 90 28.9
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 5.2e-06 55.1 104 26.9
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 5.2e-06 55.1 77 32.5
Lsat_1_v5_gn_5_104340 Lactuca sativa HOM05D004271 ORTHO05D006011 6.8e-06 54.7 106 32.1
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 6.8e-06 54.7 78 29.5
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 8.9e-06 54.3 85 27.1
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 8.9e-06 54.3 109 28.4
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 8.9e-06 54.3 93 29.0
Sp7g19250 Schrenkiella parvula HOM05D007956 ORTHO05D010152 8.9e-06 54.3 116 31.9


User provided reference genes

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