Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.7e-70 266.9 125 100.0
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.4e-65 250.4 125 95.2
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.3e-56 220.7 124 80.6
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.4e-55 219.5 124 79.8
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.8e-55 219.2 124 80.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.4e-55 218.8 124 81.5
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.3e-55 217.6 124 79.0
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 7.0e-55 217.2 124 80.6
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 7.0e-55 217.2 124 80.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.2e-54 216.5 124 80.6
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.6e-54 216.1 118 83.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.6e-54 216.1 124 78.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-54 215.3 124 77.4
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 79.0
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 79.0
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 79.0
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 78.2
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 79.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 79.0
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.5e-54 214.9 124 78.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.5e-54 214.5 124 79.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.9e-54 214.2 124 79.0
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 5.9e-54 214.2 124 79.0
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 7.7e-54 213.8 124 78.2
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.7e-54 213.8 124 78.2
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.0e-53 213.4 124 77.4
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.3e-53 213.0 124 77.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.7e-53 212.6 124 78.2
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.7e-53 212.6 124 79.8
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.7e-53 212.6 124 77.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.2e-53 212.2 123 78.9
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.2e-53 212.2 119 80.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.2e-53 212.2 124 78.2
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.2e-53 212.2 124 78.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.9e-53 211.8 124 78.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.9e-53 211.8 123 78.0
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.8e-53 211.5 124 78.2
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.8e-53 211.5 124 78.2
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.0e-53 211.1 124 76.6
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 5.0e-53 211.1 124 79.8
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 5.0e-53 211.1 124 77.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 6.5e-53 210.7 118 82.2
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.5e-53 210.7 124 78.2
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.5e-53 210.7 124 77.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.5e-53 210.7 124 78.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.5e-53 210.7 124 78.2
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 77.4
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 77.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 8.5e-53 210.3 125 75.2
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 78.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 79.0
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 78.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 78.2
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 77.4
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 8.5e-53 210.3 124 78.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 8.5e-53 210.3 119 79.8
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.1e-52 209.9 124 77.4
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-52 209.9 124 76.6
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.5e-52 209.5 119 80.7
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.5e-52 209.5 124 78.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-52 209.5 124 78.2
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.9e-52 209.1 124 78.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-52 209.1 119 79.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.9e-52 209.1 117 80.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.5e-52 208.8 124 76.6
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.5e-52 208.8 124 76.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.5e-52 208.8 118 80.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.5e-52 208.8 124 76.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.5e-52 208.8 124 77.4
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.2e-52 208.4 119 81.5
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.2e-52 208.4 124 77.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.2e-52 208.4 124 78.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.2e-52 208.4 124 77.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 3.2e-52 208.4 124 76.6
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.2e-52 208.0 123 77.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.2e-52 208.0 124 75.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 4.2e-52 208.0 119 79.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 5.5e-52 207.6 119 81.5
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.5e-52 207.6 117 81.2
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.5e-52 207.6 124 77.4
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 5.5e-52 207.6 124 77.4
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 7.2e-52 207.2 123 77.2
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.2e-52 207.2 123 77.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 7.2e-52 207.2 123 77.2
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 7.2e-52 207.2 123 77.2
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 9.4e-52 206.8 123 77.2
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.4e-52 206.8 124 76.6
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 9.4e-52 206.8 124 76.6
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.2e-51 206.5 123 76.4
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.2e-51 206.5 123 78.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.2e-51 206.5 118 79.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.6e-51 206.1 117 80.3
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.6e-51 206.1 119 80.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.6e-51 206.1 124 77.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.7e-51 205.3 117 79.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.7e-51 205.3 124 77.4
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.6e-51 204.9 124 75.8
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.6e-51 204.9 123 75.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.6e-51 204.9 118 79.7
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.6e-51 204.9 124 76.6
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.6e-51 204.9 124 78.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.7e-51 204.5 119 78.2
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 8.0e-51 203.8 124 75.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.0e-51 203.8 124 75.0
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 8.0e-51 203.8 124 75.0
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 8.0e-51 203.8 124 73.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.0e-50 203.4 117 77.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.0e-50 203.4 124 75.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.0e-50 203.4 118 78.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-50 203.4 124 73.4
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.4e-50 203.0 117 79.5
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.4e-50 203.0 118 78.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-50 202.6 118 78.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.8e-50 202.6 117 76.1
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.8e-50 202.6 124 74.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.8e-50 202.6 124 75.8
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 4.0e-50 201.4 119 76.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.2e-50 201.1 124 72.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.2e-50 201.1 124 74.2
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.7e-50 200.7 123 74.0
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 8.8e-50 200.3 124 75.0
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 8.8e-50 200.3 124 73.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.2e-49 199.9 124 74.2
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.2e-49 199.9 124 73.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.2e-49 199.9 124 71.8
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.6e-49 198.7 124 74.2
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 5.7e-49 197.6 118 77.1
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.5e-49 197.2 124 74.2
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 7.5e-49 197.2 124 70.2
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 9.7e-49 196.8 131 71.0
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.3e-48 196.4 119 77.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.7e-48 196.1 124 72.6
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.7e-48 196.1 124 75.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.7e-48 196.1 124 72.6
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.7e-48 194.9 124 73.4
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.8e-47 192.6 138 67.4
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.4e-47 192.2 124 71.8
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.1e-47 191.8 116 76.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.3e-47 191.0 124 71.8
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.7e-46 188.7 124 73.4
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.5e-46 188.3 109 79.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 5.9e-46 187.6 157 59.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-45 186.4 119 73.1
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.5e-44 183.0 124 66.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 9.4e-44 180.3 119 69.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-43 179.1 124 68.5
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.6e-43 178.3 123 67.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 6.1e-43 177.6 115 70.4
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.3e-42 175.6 124 66.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 5.2e-42 174.5 120 66.7
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.8e-40 167.9 101 76.2
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.5e-36 154.5 96 76.0
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.5e-36 153.7 86 79.1
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-34 150.2 93 77.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.4e-34 149.8 121 57.9
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.5e-33 146.4 116 56.0
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.5e-33 146.4 119 58.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.9e-32 141.4 112 57.1
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.8e-31 139.4 94 72.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 2.1e-27 125.9 79 73.4
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 9.8e-25 117.1 116 52.6
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.2e-24 115.9 67 80.6
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.9e-24 114.8 70 75.7
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.2e-23 112.1 71 73.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.0e-13 79.0 48 72.9
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 9.5e-12 73.9 48 68.8
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 9.2e-07 57.4 134 30.6


User provided reference genes

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