Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 5.2e-151 537.7 277 100.0
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.2e-94 350.5 253 74.7
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 4.4e-94 348.6 270 71.5
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.7e-93 346.7 233 76.4
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.7e-93 346.7 226 79.2
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.2e-93 346.3 219 81.3
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.2e-93 346.3 235 75.7
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 6.4e-93 344.7 230 78.7
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 8.4e-93 344.4 226 77.0
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.1e-92 344.0 266 69.5
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 247 72.1
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-92 344.0 264 72.7
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 4.2e-92 342.0 227 77.5
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 5.4e-92 341.7 263 70.0
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 7.1e-92 341.3 215 81.9
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.2e-91 340.5 264 72.7
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.1e-91 339.7 266 68.8
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.7e-91 339.3 258 71.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 6.0e-91 338.2 259 72.2
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 7.8e-91 337.8 235 77.0
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.3e-90 337.0 261 71.3
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 1.7e-90 336.7 237 74.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 5.1e-90 335.1 225 78.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 8.7e-90 334.3 212 81.1
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 8.7e-90 334.3 219 77.2
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.9e-89 333.2 234 72.6
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.9e-89 333.2 234 72.6
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.9e-89 333.2 211 80.6
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.9e-89 333.2 229 73.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.9e-89 333.2 260 68.8
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.5e-89 332.8 260 66.9
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.5e-89 332.8 199 82.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.5e-89 332.8 256 68.0
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 3.3e-89 332.4 238 73.5
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 4.3e-89 332.0 238 73.5
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 4.3e-89 332.0 265 68.3
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 5.6e-89 331.6 197 83.2
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 7.3e-89 331.3 228 74.1
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 7.3e-89 331.3 241 73.0
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 7.3e-89 331.3 265 67.9
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 9.6e-89 330.9 241 72.6
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 9.6e-89 330.9 265 67.5
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.3e-88 330.5 249 67.9
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.6e-88 330.1 238 72.7
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.6e-88 330.1 218 78.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 2.1e-88 329.7 250 69.2
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.1e-88 329.7 213 78.9
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 2.1e-88 329.7 229 73.4
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.8e-88 329.3 249 67.9
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.8e-88 329.3 216 77.3
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.8e-88 328.6 231 74.0
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.4e-87 327.0 218 75.7
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.8e-87 326.6 249 68.7
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.8e-87 326.6 228 75.0
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.4e-87 326.2 245 69.0
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.4e-87 326.2 219 77.2
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.1e-87 325.9 233 74.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.1e-87 325.9 282 65.2
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 3.1e-87 325.9 251 68.9
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 3.1e-87 325.9 229 75.1
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 4.0e-87 325.5 281 66.2
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 6.9e-87 324.7 257 69.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 6.9e-87 324.7 211 78.7
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.2e-86 323.9 259 68.0
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.5e-86 323.6 280 66.4
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 9.9e-86 320.9 263 67.7
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.7e-85 320.1 283 64.7
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.2e-85 319.7 249 71.1
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.2e-85 319.7 249 71.1
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 3.8e-85 318.9 264 64.8
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 8.4e-85 317.8 278 64.7
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.1e-84 317.4 264 65.2
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.1e-84 317.4 263 66.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 9.3e-84 314.3 195 80.5
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.2e-83 313.9 215 76.3
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.6e-83 313.5 257 66.9
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 6.0e-83 311.6 207 74.4
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 7.9e-83 311.2 218 75.7
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.0e-82 310.8 184 81.0
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 5.1e-82 308.5 199 77.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.9e-81 306.6 208 76.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.9e-81 306.6 238 68.5
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.5e-81 306.2 184 79.9
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 4.3e-81 305.4 206 74.8
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 7.4e-81 304.7 193 76.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-80 303.5 211 76.3
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.4e-79 299.7 170 86.5
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.0e-79 298.9 234 67.1
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.2e-78 297.4 259 64.1
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.2e-78 297.4 221 73.3
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.3e-77 293.9 240 65.8
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.0e-74 284.3 227 65.2
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.8e-74 283.5 328 52.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.9e-74 282.3 167 83.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 5.6e-73 278.5 253 60.9
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.6e-72 276.9 192 69.8
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 2.8e-72 276.2 199 71.4
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 4.8e-72 275.4 263 60.5
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 4.0e-71 272.3 207 68.1
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 7.9e-67 258.1 199 67.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 7.9e-67 258.1 195 72.3
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 3.9e-66 255.8 193 64.2
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 3.3e-65 252.7 240 61.2
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.3e-64 250.8 166 78.9
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.2e-52 209.5 130 80.8
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 3.2e-52 209.5 121 83.5
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 3.6e-51 206.1 201 60.7
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.8e-50 203.8 233 51.1
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.5e-44 183.3 209 53.6
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 5.5e-44 182.2 218 47.7
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.6e-43 179.5 122 77.9
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 6.7e-42 175.3 200 49.5
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 6.7e-42 175.3 217 46.1
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 6.3e-40 168.7 156 63.5
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.3e-37 161.0 96 82.3
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 8.5e-37 158.3 96 81.2
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.8e-32 143.3 162 56.2
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.7e-32 142.9 263 39.5
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.1e-31 141.4 93 77.4
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.8e-29 132.9 87 75.9
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 6.5e-29 132.1 171 48.5
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.9e-28 130.6 77 83.1
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.4e-26 124.4 132 55.3
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.1e-19 100.5 90 61.1
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 6.3e-16 89.0 66 66.7
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.1e-15 88.2 53 83.0
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 1.4e-15 87.8 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 1.8e-15 87.4 51 80.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.1e-15 86.7 169 45.0
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.5e-12 77.0 83 50.6
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.3e-12 76.3 48 77.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.7e-11 72.8 47 68.1
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 6.4e-08 62.4 47 63.8


User provided reference genes

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