Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.2e-53 213.0 112 100.0
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.2e-45 186.4 100 94.0
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.1e-10 69.3 88 44.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.0e-10 67.4 88 40.9
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 8.0e-10 67.4 77 44.2
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 3.0e-09 65.5 80 46.2
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 3.0e-09 65.5 81 46.9
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 5.2e-09 64.7 94 41.5
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 6.8e-09 64.3 80 46.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 6.8e-09 64.3 77 44.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.2e-08 63.5 87 40.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.5e-08 63.2 80 38.8
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.5e-08 63.2 81 39.5
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.5e-08 63.2 81 39.5
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.0e-08 62.8 88 43.2
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.6e-08 62.4 88 39.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.4e-08 62.0 87 41.4
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 3.4e-08 62.0 87 37.9
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 4.4e-08 61.6 69 44.9
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 9.8e-08 60.5 80 40.0
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 9.8e-08 60.5 80 45.0
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.7e-07 59.7 81 43.2
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.2e-07 59.3 81 42.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.8e-07 58.9 85 38.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.8e-07 58.9 87 39.1
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.7e-07 58.5 88 39.8
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.7e-07 58.5 87 35.6
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 4.8e-07 58.2 88 40.9
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.8e-07 58.2 77 42.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 4.8e-07 58.2 80 43.8
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 6.3e-07 57.8 94 40.4
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-06 57.0 78 41.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.1e-06 57.0 88 37.5
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.1e-06 57.0 88 37.5
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-06 57.0 73 45.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.1e-06 57.0 71 43.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.4e-06 56.6 85 38.8
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.4e-06 56.6 70 45.7
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.4e-06 56.6 85 35.3
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.4e-06 56.6 52 51.9
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.4e-06 56.6 88 38.6
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.8e-06 56.2 85 36.5
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 2.4e-06 55.8 90 40.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.4e-06 55.8 80 40.0
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.4e-06 55.8 57 50.9
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.4e-06 55.8 83 37.3
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.1e-06 55.5 78 35.9
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 3.1e-06 55.5 94 39.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.1e-06 55.5 80 41.2
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 3.1e-06 55.5 81 39.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.1e-06 55.1 66 42.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 4.1e-06 55.1 81 38.3
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 5.4e-06 54.7 85 38.8
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 5.4e-06 54.7 85 38.8
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 5.4e-06 54.7 81 42.0
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 7.0e-06 54.3 47 57.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 7.0e-06 54.3 83 41.0
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 7.0e-06 54.3 88 38.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 7.0e-06 54.3 89 38.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 7.0e-06 54.3 89 38.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 9.1e-06 53.9 80 37.5
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 9.1e-06 53.9 70 44.3


User provided reference genes

Program Settings