Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G098 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.5e-26 122.1 62 100.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.3e-22 108.2 61 90.2
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.3e-22 108.2 61 90.2
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 3.0e-22 107.8 61 88.5
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 88.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 88.5
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 88.5
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 6.6e-22 106.7 61 86.9
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 8.6e-22 106.3 61 86.9
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.1e-21 105.9 61 88.5
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.1e-21 105.9 61 88.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.9e-21 105.1 61 86.9
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.9e-21 105.1 61 86.9
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.9e-21 105.1 61 85.2
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 1.9e-21 105.1 61 86.9
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.5e-21 104.8 61 86.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.3e-21 104.4 61 85.2
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 4.3e-21 104.0 61 85.2
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 4.3e-21 104.0 61 85.2
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 4.3e-21 104.0 61 86.9
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.6e-21 103.6 61 85.2
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 5.6e-21 103.6 61 85.2
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.6e-21 103.6 61 83.6
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 7.3e-21 103.2 61 85.2
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.5e-21 102.8 61 86.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.5e-21 102.8 61 86.9
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 9.5e-21 102.8 61 86.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 9.5e-21 102.8 61 85.2
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.6e-20 102.1 61 86.9
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.6e-20 102.1 61 83.6
Lsat_1_v5_gn_5_24520 Lactuca sativa HOM05D002352 ORTHO05D003724 6.2e-20 100.1 61 82.0
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.2e-20 100.1 61 83.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.2e-20 100.1 61 83.6
ATR1081G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.0e-19 99.4 60 86.7
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-19 99.4 61 80.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.4e-19 99.0 61 80.3
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.4e-19 99.0 61 80.3
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.4e-19 99.0 61 80.3
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.4e-19 99.0 61 80.3
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.8e-19 98.6 61 85.2
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.3e-19 98.2 61 80.3
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.3e-19 98.2 61 80.3
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 80.3
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 82.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 82.0
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 80.3
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 82.0
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 80.3
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 4.0e-19 97.4 61 78.7
Hma1.2p1_0617F.1_g190130 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 5.2e-19 97.1 61 82.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 5.2e-19 97.1 61 77.0
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 8.9e-19 96.3 61 80.3
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 8.9e-19 96.3 61 80.3
Oeu043710.2 Olea europaea HOM05D002352 ORTHO05D003724 8.9e-19 96.3 59 81.4
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.2e-18 95.9 61 77.0
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 1.2e-18 95.9 60 81.7
ATR1098G084 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.5e-18 95.5 60 83.3
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.5e-18 95.5 61 77.0
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.0e-18 95.1 61 75.4
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 3.4e-18 94.4 61 80.3
MBI13_g10046_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.4e-18 94.4 61 80.3
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.4e-18 94.0 61 78.7
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 7.5e-18 93.2 61 78.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 9.8e-18 92.8 61 78.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.3e-17 92.4 61 77.0
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.7e-17 92.0 61 78.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.7e-17 92.0 61 78.7
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.7e-17 92.0 61 78.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 4.9e-17 90.5 61 77.0
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 4.9e-17 90.5 61 77.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 4.9e-17 90.5 61 77.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 4.9e-17 90.5 61 77.0
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 6.4e-17 90.1 61 77.0
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.9e-16 88.6 61 75.4
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.9e-16 88.6 61 75.4
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 4.1e-16 87.4 62 77.4
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 9.2e-16 86.3 63 74.6
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 1.6e-15 85.5 61 63.9
Lsat_1_v5_gn_8_115100 Lactuca sativa HOM05D002352 ORTHO05D003724 2.0e-15 85.1 52 78.8
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.5e-15 84.3 60 70.0
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.6e-15 84.0 64 75.0
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 7.8e-15 83.2 54 75.9
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 5.0e-14 80.5 54 77.8
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.1e-13 79.3 61 70.5
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 9.5e-13 76.3 45 86.7
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 2.8e-12 74.7 49 79.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 8.1e-12 73.2 48 79.2
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 4.0e-11 70.9 45 80.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.0e-10 68.6 60 68.3
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 1.7e-09 65.5 45 75.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.9e-09 64.7 75 52.0
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 1.2e-07 59.3 61 50.8
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.6e-07 58.9 48 66.7


User provided reference genes

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