Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.8e-251 872.1 424 100.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.8e-183 644.0 411 74.7
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.6e-181 637.9 414 73.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.3e-181 637.5 414 72.9
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 8.1e-180 634.0 412 74.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.4e-179 633.3 412 74.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 4.0e-179 631.7 412 73.3
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 9.0e-179 630.6 412 73.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.6e-178 629.0 406 74.4
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.2e-177 625.9 411 72.5
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.8e-177 625.2 414 72.0
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.9e-177 624.8 412 72.8
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.9e-177 624.8 411 72.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 8.4e-177 624.0 412 72.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.1e-176 623.6 411 73.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.1e-176 623.6 411 72.7
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.1e-176 623.6 411 72.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-176 623.2 414 72.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.4e-176 623.2 411 73.0
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.4e-176 622.5 411 73.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.2e-176 621.7 411 73.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 7.1e-176 620.9 413 72.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.3e-176 620.5 411 73.2
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.6e-175 619.8 411 72.5
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-175 619.4 411 72.5
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.7e-175 619.0 413 72.6
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.5e-175 618.6 415 71.3
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.6e-175 618.2 415 71.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.6e-175 618.2 412 71.6
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 4.6e-175 618.2 413 72.4
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 4.6e-175 618.2 411 72.3
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 6.0e-175 617.8 411 71.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.0e-175 617.8 411 73.0
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 6.0e-175 617.8 414 72.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.0e-174 617.1 411 72.5
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.0e-174 617.1 411 72.5
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.0e-174 617.1 411 73.0
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.3e-174 616.7 413 72.4
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.7e-174 616.3 411 73.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.7e-174 616.3 412 73.1
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.3e-174 615.9 411 71.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.0e-174 615.5 412 71.4
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.0e-174 615.5 411 72.3
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.9e-174 615.1 411 72.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.9e-174 615.1 411 73.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.9e-174 615.1 411 73.0
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.9e-174 615.1 412 72.8
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.1e-174 614.8 411 71.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 6.6e-174 614.4 412 72.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 8.7e-174 614.0 433 69.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-173 613.6 411 72.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.5e-173 612.5 415 70.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.5e-173 612.5 411 70.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.5e-173 612.5 413 70.9
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.3e-173 612.1 411 71.8
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.3e-173 612.1 412 71.6
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.3e-173 611.7 415 70.6
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.3e-173 611.7 415 70.8
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 5.6e-173 611.3 415 71.1
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 5.6e-173 611.3 415 71.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 7.3e-173 610.9 411 71.3
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.6e-173 610.5 426 70.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.3e-172 610.1 412 72.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.3e-172 610.1 413 70.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.6e-172 609.8 415 70.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.6e-172 609.8 431 68.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.1e-172 609.4 431 69.6
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.8e-172 609.0 411 72.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 3.6e-172 608.6 411 71.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 6.2e-172 607.8 412 70.1
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 6.2e-172 607.8 413 70.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.1e-172 607.4 427 70.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 8.1e-172 607.4 414 71.3
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.4e-171 606.7 411 71.5
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-171 606.3 427 70.5
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.4e-171 605.9 416 70.2
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.4e-171 605.9 411 69.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 2.4e-171 605.9 412 68.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.1e-171 605.5 411 70.3
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.0e-171 605.1 411 71.3
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.0e-171 605.1 415 69.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.9e-171 604.4 412 70.9
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 9.0e-171 604.0 411 69.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 9.0e-171 604.0 411 70.8
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 9.0e-171 604.0 415 70.6
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.5e-170 603.2 411 69.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-170 602.8 427 70.3
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.5e-170 601.7 411 70.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 7.6e-170 600.9 411 70.6
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 9.9e-170 600.5 411 70.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 9.9e-170 600.5 413 68.8
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.3e-169 600.1 411 70.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.3e-169 600.1 413 69.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-169 600.1 428 68.5
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.3e-169 600.1 413 70.2
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-169 599.7 411 70.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-169 599.7 411 70.3
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.2e-169 599.4 411 70.6
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.9e-169 599.0 411 70.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.8e-169 598.6 413 68.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.9e-169 598.2 411 69.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 6.4e-169 597.8 411 70.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.4e-168 595.9 411 68.9
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.7e-167 592.4 412 68.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.5e-167 592.0 411 69.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 6.0e-167 591.3 452 64.8
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.9e-167 590.9 412 68.9
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-166 590.5 411 69.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.8e-166 589.7 411 69.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 6.7e-166 587.8 413 69.0
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.6e-165 584.7 412 66.3
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.1e-164 582.8 413 66.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.7e-164 582.0 412 67.2
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 4.8e-164 581.6 410 68.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.2e-164 581.3 411 68.4
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.1e-163 580.5 411 68.4
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 5.3e-163 578.2 419 67.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.4e-162 575.5 411 68.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.7e-161 573.2 419 67.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.1e-160 570.5 411 68.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.5e-160 568.2 414 68.8
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.6e-159 565.1 408 68.4
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 4.6e-159 565.1 495 58.4
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 6.0e-159 564.7 416 65.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.0e-158 563.9 357 74.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-158 563.1 444 63.1
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.3e-156 557.0 417 66.4
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.2e-156 554.3 410 64.1
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.0e-154 549.7 412 64.1
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.2e-153 546.2 367 70.8
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.5e-152 542.7 360 72.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.6e-151 540.0 415 62.4
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.0e-150 537.3 356 70.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.3e-149 531.9 415 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 6.9e-147 524.6 413 61.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.2e-145 519.6 411 60.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.1e-142 508.4 343 70.3
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.4e-139 499.6 339 69.0
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.5e-138 495.4 411 58.2
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.7e-132 475.7 429 57.3
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.7e-127 458.8 424 54.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.1e-123 447.6 413 54.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 9.1e-123 444.5 282 75.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.2e-121 439.9 339 64.3
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-108 394.8 312 62.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.5e-106 389.0 223 79.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.0e-105 387.9 301 64.5
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.8e-105 386.0 423 47.5
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.3e-102 376.7 419 46.5
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.3e-102 376.7 412 47.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 3.0e-102 376.3 283 64.7
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 4.5e-98 362.5 500 39.2
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.0e-89 333.2 164 98.2
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 6.6e-89 332.0 242 65.3
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 7.5e-85 318.5 235 64.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.9e-80 303.9 198 71.7
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.1e-79 298.5 198 70.2
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.2e-68 263.8 134 95.5
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-66 256.9 215 60.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 8.7e-65 251.9 219 58.9
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.9e-64 250.8 125 95.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.1e-54 218.4 172 61.6
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.5e-53 213.0 150 66.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.3e-52 211.5 258 46.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.4e-51 208.0 178 59.6
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.1e-49 199.5 228 47.8
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.5e-48 198.0 193 54.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.8e-47 193.7 153 61.4
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.5e-43 180.6 335 35.5
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.1e-39 167.5 121 65.3
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-38 165.2 341 34.6
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.0e-38 163.3 122 63.1
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.0e-36 158.7 124 62.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.9e-32 144.4 98 72.4
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.3e-25 120.9 66 77.3
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.9e-25 120.2 61 95.1
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.7e-23 113.6 71 73.2
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-22 110.9 124 50.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 5.3e-22 109.8 84 61.9
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.9e-12 77.4 60 70.0
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.5e-08 65.1 87 37.9
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 7.4e-08 62.8 100 36.0
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 9.7e-08 62.4 35 74.3
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.1e-06 57.0 133 28.6


User provided reference genes

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