Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G051 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.1e-34 149.4 79 100.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.5e-26 122.5 71 90.1
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 9.0e-24 113.2 66 89.4
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 2.0e-23 112.1 70 85.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.4e-23 111.3 66 87.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.4e-23 111.3 66 87.9
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.4e-23 111.3 66 87.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 7.6e-23 110.2 66 86.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 7.6e-23 110.2 66 86.4
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.3e-22 109.4 66 86.4
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.3e-22 109.4 65 87.7
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.3e-22 109.4 66 86.4
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.3e-22 109.4 66 86.4
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.7e-22 109.0 66 86.4
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.7e-22 109.0 66 84.8
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.7e-22 109.0 66 84.8
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.2e-22 108.6 66 86.4
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.2e-22 108.6 66 84.8
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.2e-22 108.6 66 84.8
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.9e-22 108.2 70 81.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.9e-22 108.2 70 81.4
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.9e-22 108.2 66 86.4
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.9e-22 108.2 66 84.8
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 3.8e-22 107.8 70 81.4
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 3.8e-22 107.8 66 84.8
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.8e-22 107.8 66 83.3
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.8e-22 107.8 70 81.4
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.8e-22 107.8 66 84.8
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.8e-22 107.8 66 84.8
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 83.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 4.9e-22 107.5 66 84.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 4.9e-22 107.5 70 78.6
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 6.4e-22 107.1 66 83.3
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 6.4e-22 107.1 70 80.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 6.4e-22 107.1 70 80.0
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 6.4e-22 107.1 70 81.4
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.4e-22 107.1 67 85.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 6.4e-22 107.1 66 84.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 6.4e-22 107.1 66 83.3
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 6.4e-22 107.1 66 84.8
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 6.4e-22 107.1 70 80.0
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.4e-22 107.1 65 86.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.4e-22 107.1 65 86.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 8.4e-22 106.7 67 83.6
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 8.4e-22 106.7 66 83.3
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 8.4e-22 106.7 66 83.3
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 1.1e-21 106.3 70 80.0
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 84.8
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 84.8
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-21 106.3 66 83.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.4e-21 105.9 66 83.3
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.4e-21 105.9 66 83.3
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.4e-21 105.9 66 83.3
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.4e-21 105.9 66 83.3
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.4e-21 105.9 66 84.8
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.9e-21 105.5 71 81.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.9e-21 105.5 66 83.3
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.4e-21 105.1 66 83.3
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 2.4e-21 105.1 66 80.3
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 81.8
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 81.8
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 81.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 83.3
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 81.8
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.2e-21 104.8 66 81.8
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.2e-21 104.4 66 81.8
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 4.2e-21 104.4 66 81.8
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.2e-21 104.4 66 81.8
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.2e-21 104.4 66 83.3
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 4.2e-21 104.4 66 81.8
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 5.4e-21 104.0 66 80.3
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.4e-21 104.0 66 80.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 5.4e-21 104.0 63 85.7
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 7.1e-21 103.6 66 83.3
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 7.1e-21 103.6 66 80.3
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 9.3e-21 103.2 66 78.8
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 9.3e-21 103.2 66 81.8
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 9.3e-21 103.2 66 80.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 9.3e-21 103.2 66 81.8
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.2e-20 102.8 66 80.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 81.8
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.6e-20 102.4 66 80.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.1e-20 102.1 63 84.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.7e-20 101.7 66 80.3
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 3.5e-20 101.3 66 78.8
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 4.6e-20 100.9 63 84.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 6.0e-20 100.5 66 80.3
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-19 99.8 65 80.0
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.0e-19 99.8 70 77.1
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.7e-19 99.0 66 78.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.7e-19 99.0 66 80.3
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.3e-19 98.6 66 77.3
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.5e-18 95.9 66 78.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.3e-18 94.7 66 75.8
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.3e-18 94.7 66 75.8
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 5.6e-18 94.0 79 68.4
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 7.3e-18 93.6 63 76.2
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 7.3e-18 93.6 70 74.3
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 1.4e-16 89.4 62 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 6.9e-16 87.0 63 74.6
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 6.9e-16 87.0 65 73.8
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 9.0e-16 86.7 65 72.3
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 9.9e-15 83.2 64 75.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.1e-13 79.7 59 71.2
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.2e-12 76.3 59 69.5
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-12 75.9 71 66.2
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.3e-11 72.0 65 63.1
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 2.8e-09 65.1 68 54.4
SHI23484 Sapria himalayana HOM05D002352 ORTHO05D013021 9.9e-07 56.6 41 75.6
ECA248G2919 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.7e-06 55.8 50 58.0
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 2.2e-06 55.5 41 73.2
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.9e-06 54.3 51 66.7
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 8.4e-06 53.5 42 69.0


User provided reference genes

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