Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.7e-72 273.9 134 100.0
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-68 263.1 134 95.5
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.5e-42 175.6 124 68.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 5.6e-42 174.5 122 68.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 5.6e-42 174.5 122 68.9
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.2e-42 174.1 123 66.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.2e-41 173.3 124 65.3
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.6e-41 172.9 124 63.7
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 6.1e-41 171.0 124 66.1
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.4e-40 169.9 122 66.4
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.8e-40 169.5 122 64.8
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-40 169.5 122 66.4
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-40 169.5 122 63.9
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.3e-40 169.1 122 64.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.2e-40 167.9 124 62.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.2e-40 167.9 122 66.4
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.8e-40 167.5 122 64.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.5e-39 166.4 122 63.9
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-39 166.4 122 64.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.0e-39 166.0 124 62.1
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.0e-39 166.0 122 65.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.6e-39 165.6 122 65.6
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.4e-39 164.9 122 63.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 5.7e-39 164.5 119 63.0
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.7e-39 164.5 122 63.9
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.7e-39 164.5 122 64.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 9.8e-39 163.7 122 62.3
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 9.8e-39 163.7 122 64.8
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.3e-38 163.3 122 62.3
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.3e-38 163.3 124 62.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-38 163.3 122 62.3
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.7e-38 162.9 122 63.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.2e-38 162.5 122 63.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.9e-38 162.2 126 59.5
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.9e-38 162.2 122 60.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.9e-38 162.2 124 62.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.7e-38 161.8 122 63.1
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 3.7e-38 161.8 124 62.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.7e-38 161.8 124 62.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.9e-38 161.4 122 63.1
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-38 161.4 122 63.9
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-38 161.4 122 63.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 4.9e-38 161.4 122 63.9
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.9e-38 161.4 122 60.7
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.9e-38 161.4 124 60.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.4e-38 161.0 122 61.5
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.3e-38 160.6 122 62.3
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 8.3e-38 160.6 126 60.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 8.3e-38 160.6 122 63.1
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-37 160.2 122 62.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-37 160.2 122 62.3
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.1e-37 160.2 122 60.7
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-37 160.2 122 60.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.4e-37 159.8 126 58.7
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.4e-37 159.8 122 61.5
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.4e-37 159.8 124 61.3
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-37 159.8 124 62.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.4e-37 159.8 122 59.8
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-37 159.5 122 63.1
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-37 159.5 122 63.1
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.8e-37 159.5 124 62.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.8e-37 159.5 122 62.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.8e-37 159.5 122 60.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.8e-37 159.5 122 61.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.8e-37 159.5 119 61.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.2e-37 158.7 122 60.7
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.2e-37 158.7 122 61.5
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.2e-37 158.7 122 62.3
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.1e-37 158.3 124 62.1
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.4e-37 157.9 124 61.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 5.4e-37 157.9 122 60.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.4e-37 157.9 122 59.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 7.0e-37 157.5 127 57.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 7.0e-37 157.5 127 57.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.0e-37 157.5 122 60.7
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 7.0e-37 157.5 123 61.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 7.0e-37 157.5 122 59.8
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 7.0e-37 157.5 122 61.5
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.0e-37 157.5 122 61.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 9.2e-37 157.1 122 61.5
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.2e-36 156.8 124 58.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.2e-36 156.8 122 60.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-36 156.8 122 64.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.2e-36 156.8 122 60.7
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.6e-36 156.4 124 60.5
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.6e-36 156.4 124 60.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.0e-36 156.0 127 56.7
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.0e-36 156.0 122 60.7
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.7e-36 155.6 127 56.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.7e-36 155.6 127 56.7
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 59.0
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 59.0
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 59.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 61.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 61.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.7e-36 155.6 122 59.0
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.5e-36 155.2 122 60.7
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.5e-36 155.2 122 60.7
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.5e-36 155.2 122 61.5
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 4.6e-36 154.8 124 56.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 5.9e-36 154.5 122 63.1
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.9e-36 154.5 121 58.7
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 5.9e-36 154.5 122 61.5
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 7.8e-36 154.1 122 60.7
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 7.8e-36 154.1 122 62.3
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.8e-36 154.1 122 60.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.0e-35 153.7 122 59.8
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.0e-35 153.7 127 55.9
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.0e-35 153.7 122 63.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.0e-35 153.7 122 62.3
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-35 153.3 122 60.7
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.3e-35 153.3 122 59.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.7e-35 152.9 127 55.9
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.7e-35 152.9 122 59.8
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-35 152.5 122 62.3
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.9e-35 152.1 122 59.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-35 151.4 122 58.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 6.6e-35 151.0 127 55.1
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.6e-35 150.6 122 62.3
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.6e-35 150.6 119 58.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.1e-34 150.2 127 53.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.5e-34 149.8 123 56.9
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.5e-34 149.8 121 59.5
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.9e-34 149.4 120 59.2
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.5e-34 149.1 123 55.3
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.5e-34 149.1 122 54.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 4.3e-34 148.3 119 58.0
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 5.6e-34 147.9 123 56.9
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 7.3e-34 147.5 122 55.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 7.3e-34 147.5 122 55.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 9.5e-34 147.1 123 57.7
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 9.5e-34 147.1 129 58.1
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 9.5e-34 147.1 122 56.6
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-33 146.4 127 57.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.1e-33 146.0 123 56.9
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 2.8e-33 145.6 123 56.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 4.7e-33 144.8 123 56.9
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.7e-33 144.8 129 56.6
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.2e-33 144.4 124 57.3
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.0e-32 143.7 122 55.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 5.2e-32 141.4 144 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 6.8e-32 141.0 124 53.2
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 4.9e-30 134.8 124 50.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-29 132.9 114 57.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.0e-29 131.0 120 51.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.0e-28 129.4 118 49.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.5e-26 123.2 123 46.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-24 117.1 84 66.7
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.9e-22 108.2 124 47.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.9e-22 108.2 124 47.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.1e-21 105.1 124 46.0
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 9.2e-21 104.0 81 61.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 3.0e-19 99.0 126 42.9
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.1e-18 97.1 71 63.4
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.5e-18 96.7 111 46.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.6e-18 94.7 71 62.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.1e-17 90.9 71 57.7
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.1e-17 90.9 71 59.2
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.1e-16 90.5 70 57.1
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.4e-16 90.1 71 60.6
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.9e-16 87.4 70 54.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.5e-15 86.7 134 36.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.0e-15 86.3 122 41.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 4.9e-14 81.6 156 32.1
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.9e-13 79.7 120 36.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.7e-09 65.1 87 37.9
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.8e-08 63.2 87 37.9


User provided reference genes

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