Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.8e-216 754.6 387 100.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.2e-167 590.9 387 77.8
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.2e-167 590.9 391 77.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.6e-166 588.6 391 76.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.8e-165 586.3 393 76.1
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.3e-165 585.9 391 76.5
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.0e-165 585.5 392 76.8
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.0e-164 582.8 386 76.7
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 4.4e-164 581.6 392 77.0
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.3e-163 580.1 396 75.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 2.8e-163 578.9 391 75.7
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.7e-163 578.6 390 75.9
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 6.3e-163 577.8 391 74.9
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.8e-162 576.2 391 76.0
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 3.1e-162 575.5 392 75.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 9.1e-162 573.9 390 76.4
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.4e-161 572.0 388 75.3
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.5e-161 571.6 390 76.2
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.7e-161 570.9 387 74.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 7.7e-161 570.9 390 74.4
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.7e-160 569.7 392 74.5
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 8.5e-160 567.4 388 74.2
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 8.5e-160 567.4 402 73.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.1e-159 567.0 390 74.4
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.2e-159 565.1 396 75.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 5.5e-159 564.7 391 73.9
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 5.5e-159 564.7 387 74.7
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 9.4e-159 563.9 389 73.3
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.2e-158 563.5 389 73.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.6e-158 563.1 386 75.1
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.6e-158 562.0 389 73.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.7e-158 561.6 396 73.7
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.8e-157 559.7 390 73.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 6.7e-157 557.8 406 71.7
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 8.8e-157 557.4 393 73.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 8.8e-157 557.4 390 73.8
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 8.8e-157 557.4 392 72.7
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.8e-157 557.4 386 74.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.1e-156 557.0 390 74.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.5e-156 556.6 390 73.3
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.3e-156 555.4 390 73.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-156 555.4 391 73.7
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.7e-156 554.7 395 72.2
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.7e-156 554.7 392 73.2
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 7.4e-156 554.3 390 72.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 9.7e-156 553.9 388 74.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.3e-155 553.5 388 72.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.3e-155 553.5 390 73.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.7e-155 553.1 386 74.1
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.3e-155 551.2 389 72.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 6.3e-155 551.2 392 73.2
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.1e-154 550.4 395 71.4
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.1e-154 550.4 404 71.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.4e-154 550.1 390 73.1
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.4e-154 550.1 428 69.4
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.3e-154 548.1 399 71.9
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 5.3e-154 548.1 390 72.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 7.0e-154 547.7 393 72.8
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 7.0e-154 547.7 390 72.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 9.1e-154 547.4 391 72.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 9.1e-154 547.4 395 71.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 9.1e-154 547.4 391 71.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-153 547.0 391 71.9
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-153 546.2 390 71.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.0e-153 546.2 385 73.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.6e-153 545.8 401 71.6
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 3.5e-153 545.4 394 73.1
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.5e-153 545.4 392 71.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.5e-153 545.0 392 72.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.9e-153 544.7 391 72.4
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 5.9e-153 544.7 401 70.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 7.7e-153 544.3 398 71.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.0e-152 543.9 401 71.3
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-152 543.5 399 70.7
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.7e-152 543.1 387 73.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.5e-152 540.8 390 71.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.1e-151 540.4 396 71.5
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.1e-151 540.4 393 71.5
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.5e-151 540.0 401 70.8
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.5e-151 539.3 390 70.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.5e-151 538.1 390 71.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-150 537.0 404 68.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.6e-150 535.4 421 67.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.6e-150 535.4 421 67.9
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.6e-150 535.4 394 70.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 6.1e-150 534.6 391 71.9
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 8.0e-150 534.3 390 72.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.4e-149 533.5 397 71.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.4e-149 533.5 400 70.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.0e-149 531.9 391 70.3
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 5.2e-149 531.6 392 71.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 9.7e-148 527.3 412 68.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.3e-147 526.9 394 69.5
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 6.3e-147 524.6 337 78.0
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.5e-145 518.8 394 69.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 7.7e-145 517.7 396 68.9
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.5e-143 512.7 393 69.7
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.0e-141 505.4 397 67.5
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.8e-141 504.6 390 67.4
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.2e-140 503.8 318 78.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-140 503.4 346 75.4
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.5e-140 503.4 346 75.4
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.5e-140 501.1 390 68.7
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.4e-138 496.1 330 75.5
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.8e-136 488.8 293 82.9
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.9e-131 471.9 338 73.4
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.3e-128 463.8 456 58.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.3e-128 463.8 456 58.3
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.5e-127 460.3 396 62.9
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.9e-127 459.9 394 60.4
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 9.5e-127 457.6 357 67.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 6.8e-125 451.4 309 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.0e-121 439.9 403 56.8
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 3.7e-107 392.5 361 56.2
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.2e-105 387.5 405 55.6
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.6e-102 377.1 249 77.1
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.8e-101 371.7 389 54.8
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.3e-96 357.5 324 61.7
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.5e-89 332.8 323 53.9
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.6e-86 322.8 302 60.3
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.6e-84 315.1 328 55.8
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.1e-80 302.4 262 61.8
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 8.7e-80 301.6 402 45.0
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 6.2e-78 295.4 396 44.4
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.7e-67 260.8 449 39.0
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.5e-65 253.1 444 36.0
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.1e-56 222.6 128 82.8
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 7.4e-55 218.8 134 79.9
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.3e-54 218.0 303 44.9
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.1e-53 213.0 280 43.2
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-45 188.0 301 37.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-42 177.6 109 78.9
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.2e-42 176.8 117 75.2
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 4.2e-42 176.4 300 35.0
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.2e-40 169.5 106 75.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.7e-35 154.5 131 61.8
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.7e-33 147.1 98 74.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 8.5e-27 125.6 117 57.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 4.0e-24 116.7 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.8e-22 109.8 58 82.8
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.1e-17 94.4 93 58.1
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 8.0e-17 92.4 133 43.6
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 3.0e-16 90.5 96 47.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.2e-16 89.7 68 66.2
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.0e-11 75.5 52 71.2
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.3e-11 74.3 73 61.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.6e-11 72.4 107 40.2
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.9e-10 71.2 96 43.8
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.3e-10 70.1 47 70.2
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.7e-09 66.6 51 64.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 4.7e-09 66.6 40 80.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 4.0e-08 63.5 39 74.4
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 5.2e-08 63.2 50 58.0
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 8.9e-08 62.4 46 67.4
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 7.5e-07 59.3 36 80.6
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 7.5e-07 59.3 36 80.6
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 7.5e-07 59.3 36 80.6
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 9.8e-07 58.9 141 29.1
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 58.5 141 29.1
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 58.5 141 29.1
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.7e-06 58.2 141 29.1
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-06 57.4 130 29.2
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-06 57.4 141 29.1
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 6.4e-06 56.2 67 46.3


User provided reference genes

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