Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 3.7e-59 231.5 128 100.0
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 7.4e-28 127.5 124 61.3
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 8.2e-27 124.0 107 64.5
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 8.2e-27 124.0 121 62.8
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.4e-26 123.2 121 62.0
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-26 122.9 121 62.0
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-26 122.9 121 62.0
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.8e-26 122.9 121 62.0
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-26 122.9 107 62.6
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-26 122.9 107 62.6
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.8e-26 122.9 107 63.6
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 3.1e-26 122.1 124 59.7
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 4.1e-26 121.7 114 60.5
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 5.3e-26 121.3 124 59.7
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 5.3e-26 121.3 126 61.1
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 5.3e-26 121.3 107 62.6
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 9.1e-26 120.6 129 58.1
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 9.1e-26 120.6 126 61.1
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 9.1e-26 120.6 124 62.1
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 9.1e-26 120.6 108 63.9
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 9.1e-26 120.6 124 59.7
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.2e-25 120.2 116 62.9
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.5e-25 119.8 107 61.7
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 2.0e-25 119.4 103 67.0
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 2.0e-25 119.4 107 61.7
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 2.0e-25 119.4 124 61.3
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 2.6e-25 119.0 129 57.4
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 2.6e-25 119.0 123 58.5
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 4.5e-25 118.2 124 58.1
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 4.5e-25 118.2 106 65.1
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 5.9e-25 117.9 107 62.6
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 7.7e-25 117.5 124 58.9
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 7.7e-25 117.5 107 59.8
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 7.7e-25 117.5 121 59.5
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 7.7e-25 117.5 108 63.0
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 1.0e-24 117.1 124 58.1
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.0e-24 117.1 100 66.0
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 1.3e-24 116.7 107 59.8
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.7e-24 116.3 124 57.3
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.2e-24 115.9 125 56.0
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.2e-24 115.9 124 57.3
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.2e-24 115.9 124 58.9
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 2.9e-24 115.5 101 61.4
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.9e-24 115.5 124 56.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 5.0e-24 114.8 124 58.9
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 6.5e-24 114.4 114 61.4
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 6.5e-24 114.4 124 59.7
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 6.5e-24 114.4 124 58.9
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 6.5e-24 114.4 107 60.7
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 8.5e-24 114.0 98 63.3
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 8.5e-24 114.0 124 57.3
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 1.1e-23 113.6 123 59.3
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.1e-23 113.6 124 56.5
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.1e-23 113.6 124 58.1
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 1.1e-23 113.6 124 58.9
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 1.5e-23 113.2 124 55.6
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 1.9e-23 112.8 99 61.6
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 1.9e-23 112.8 124 55.6
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 2.5e-23 112.5 114 57.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.5e-23 112.5 124 55.6
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 2.5e-23 112.5 114 57.9
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 2.5e-23 112.5 99 62.6
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 3.2e-23 112.1 124 55.6
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 5.5e-23 111.3 123 58.5
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 9.4e-23 110.5 108 61.1
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 9.4e-23 110.5 100 65.0
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 9.4e-23 110.5 98 61.2
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 9.4e-23 110.5 124 55.6
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 9.4e-23 110.5 103 60.2
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 1.2e-22 110.2 116 56.0
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.6e-22 109.8 124 54.8
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 2.1e-22 109.4 124 58.1
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 2.1e-22 109.4 124 55.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 2.1e-22 109.4 125 55.2
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 2.7e-22 109.0 100 64.0
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 3.6e-22 108.6 124 54.0
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 4.7e-22 108.2 102 60.8
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 4.7e-22 108.2 102 60.8
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 4.7e-22 108.2 102 60.8
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 4.7e-22 108.2 114 57.0
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 4.7e-22 108.2 125 57.6
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 8.0e-22 107.5 106 60.4
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 8.0e-22 107.5 103 59.2
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.4e-21 106.7 123 55.3
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 1.8e-21 106.3 115 56.5
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 2.3e-21 105.9 106 60.4
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 4.0e-21 105.1 125 51.2
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 5.2e-21 104.8 87 65.5
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.5e-20 103.2 106 58.5
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 2.0e-20 102.8 100 58.0
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.3e-20 102.1 125 56.0
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 3.3e-20 102.1 104 55.8
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 3.3e-20 102.1 131 47.3
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 4.4e-20 101.7 108 56.5
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 4.4e-20 101.7 97 59.8
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 6.3e-19 97.8 97 57.7
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 7.0e-18 94.4 91 63.7
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 2.0e-17 92.8 85 60.0
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 1.3e-16 90.1 98 55.1
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.5e-15 86.7 106 55.7
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.5e-15 86.7 96 53.1
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 2.5e-15 85.9 106 54.7
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 5.5e-15 84.7 97 49.5
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 9.4e-15 84.0 126 52.4
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.2e-14 83.6 86 55.8
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.6e-14 83.2 123 48.0
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.3e-13 79.3 81 56.8
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.5e-12 76.6 81 55.6
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.5e-12 76.6 67 64.2
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 3.7e-11 72.0 99 43.4
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 2.4e-10 69.3 89 52.8
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.0e-09 66.2 90 43.3
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.1e-07 60.5 79 48.1


User provided reference genes

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