Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0585G024 Amborella trichopoda HOM05D005799 ORTHO05D007150 1.1e-50 203.0 97 100.0
SGA_v2.0_scaffold36G14279 Striga asiatica HOM05D005799 ORTHO05D007150 1.9e-23 112.5 95 63.2
MBI12_g03921_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 9.3e-23 110.2 94 62.8
ATR0810G200 Amborella trichopoda HOM05D005799 ORTHO05D007150 1.6e-22 109.4 94 62.8
TAR375G0991 Trochodendron aralioides HOM05D005799 ORTHO05D007150 1.6e-22 109.4 94 62.8
Dinv12007 Davidia involucrata HOM05D005799 ORTHO05D007150 2.1e-22 109.0 94 61.7
Manes.02G004000 Manihot esculenta HOM05D005799 ORTHO05D007150 2.1e-22 109.0 94 61.7
SMO307G0078 Selaginella moellendorffii HOM05D005799 ORTHO05D007150 2.1e-22 109.0 94 61.7
ClCG10G000860 Citrullus lanatus HOM05D005799 ORTHO05D007150 2.7e-22 108.6 94 60.6
CsaV3_3G000940 Cucumis sativus L. HOM05D005799 ORTHO05D007150 2.7e-22 108.6 94 60.6
Rhsim02G0251100 Rhododendron simsii HOM05D005799 ORTHO05D007150 2.7e-22 108.6 94 60.6
vmacro11512 Vaccinium macrocarpon HOM05D005799 ORTHO05D007150 2.7e-22 108.6 94 60.6
arahy.Tifrunner.gnm1.ann1.YTN4Z3 Arachis hypogaea HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
EL10Ac5g12455 Beta vulgaris HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
CAN.G335.7 Capsicum annuum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
CiPaw.12G078600 Carya illinoinensis HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
CDE04G1382 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
CDE07G1281 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Ca_17312_v3 Cicer arietinum L. HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Ciclev10019070m.g Citrus clementina HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Nn3g18897 Nelumbo nucifera HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Nitab4.5_0000151g0390 Nicotiana tabacum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Nitab4.5_0000837g0110 Nicotiana tabacum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Peaxi162Scf00161g00018 Petunia axillaris HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Phvul.010G102500 Phaseolus vulgaris HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Potri.001G085200 Populus trichocarpa HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
PGR031G2117 Punica granatum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
QL02p029127 Quercus lobata HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Sabra01G0061800 Salix brachista HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Solyc08g066730.3 Solanum lycopersicum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Sopen08g020700 Solanum pennellii HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
PGSC0003DMG400004314 Solanum tuberosum HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
TWI60G1445 Tripterygium wilfordii HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
VMungo0331G1577 Vigna mungo HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
GSVIVG01019635001 Vitis vinifera HOM05D005799 ORTHO05D007150 3.5e-22 108.2 94 60.6
Actinidia22199 Actinidia chinensis HOM05D005799 ORTHO05D007150 4.6e-22 107.8 94 60.6
CSS0005333 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 4.6e-22 107.8 94 60.6
CSS0012502 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 4.6e-22 107.8 94 60.6
MBI17_g40130_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 4.6e-22 107.8 94 61.7
Cc08_g16640 Coffea canephora HOM05D005799 ORTHO05D007150 6.0e-22 107.5 94 60.6
Peaxi162Scf00039g00141 Petunia axillaris HOM05D005799 ORTHO05D007150 6.0e-22 107.5 94 60.6
Aa31LG9G11310 Aethionema arabicum HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
AL6G44810 Arabidopsis lyrata HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
AT4G10760 Arabidopsis thaliana HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
Carub.0006s2954 Capsella rubella HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
CARHR255850 Cardamine hirsuta HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
Cpa.g.sc1337.1 Carica papaya HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
Thhalv10028481m.g Eutrema salsugineum HOM05D005799 ORTHO05D007150 7.9e-22 107.1 69 78.3
Glyma.07G067100 Glycine max HOM05D005799 ORTHO05D007150 7.9e-22 107.1 94 59.6
Lj8C201G21 Lonicera japonica HOM05D005799 ORTHO05D007150 7.9e-22 107.1 94 60.6
Mapoly0036s0127 Marchantia polymorpha HOM05D005799 ORTHO05D007150 7.9e-22 107.1 94 59.6
SEGI_05717 Sequoiadendron giganteum HOM05D005799 ORTHO05D007150 7.9e-22 107.1 94 60.6
HPP92_007392 Vanilla planifolia HOM05D005799 ORTHO05D007150 7.9e-22 107.1 94 59.6
Cfa011938 Carpinus fangiana HOM05D005799 ORTHO05D007150 1.0e-21 106.7 94 60.6
Haze_09149 Corylus avellana HOM05D005799 ORTHO05D007150 1.0e-21 106.7 94 60.6
Duzib205G1547 Durio zibethinus HOM05D005799 ORTHO05D007150 1.0e-21 106.7 94 59.6
Oeu010742.3 Olea europaea HOM05D005799 ORTHO05D007150 1.0e-21 106.7 69 76.8
SalBow6G6472 Salvia bowleyana HOM05D005799 ORTHO05D007150 1.0e-21 106.7 69 76.8
MSTRG.12196 Avicennia marina HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 58.5
AUR62007039 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 58.5
AUR62019903 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 58.5
Lalb_Chr10g0096751 Lupinus albus HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 59.6
Medtr8g104280 Medicago truncatula HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 59.6
Psat7g010960 Pisum sativum HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 59.6
Sed0010941 Sechium edule HOM05D005799 ORTHO05D007150 1.3e-21 106.3 69 76.8
Thecc.03G222800 Theobroma cacao HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 59.6
TPR.G32682 Trifolium pratense HOM05D005799 ORTHO05D007150 1.3e-21 106.3 94 59.6
Ah.07g197850 Amaranthus hybridus HOM05D005799 ORTHO05D007150 1.8e-21 105.9 94 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1158 Anthoceros agrestis HOM05D005799 ORTHO05D007150 1.8e-21 105.9 94 59.6
CAN.G1079.6 Capsicum annuum HOM05D005799 ORTHO05D007150 1.8e-21 105.9 69 76.8
Migut.I01141 Erythranthe guttata HOM05D005799 ORTHO05D007150 1.8e-21 105.9 69 76.8
Eucgr.D01689 Eucalyptus grandis HOM05D005799 ORTHO05D007150 1.8e-21 105.9 94 60.6
Lalb_Chr04g0259181 Lupinus albus HOM05D005799 ORTHO05D007150 2.3e-21 105.5 94 59.6
unitig_748.g7543 Utricularia gibba HOM05D005799 ORTHO05D007150 2.3e-21 105.5 94 58.5
Glyma.16G033100 Glycine max HOM05D005799 ORTHO05D007150 3.0e-21 105.1 69 76.8
Os02g0672600 Oryza sativa ssp. japonica HOM05D005799 ORTHO05D007150 3.0e-21 105.1 94 59.6
TPR.G37954 Trifolium pratense HOM05D005799 ORTHO05D007150 3.0e-21 105.1 94 59.6
BcaB01g01512 Brassica carinata HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
BcaC04g21070 Brassica carinata HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
A09p28470 Brassica napus HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
C09p36040 Brassica napus HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
BolC9t56443H Brassica oleracea HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
BraA09t38412Z Brassica rapa HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
Gohir.A12G239300 Gossypium hirsutum HOM05D005799 ORTHO05D007150 5.1e-21 104.4 94 58.5
Gohir.D12G240500 Gossypium hirsutum HOM05D005799 ORTHO05D007150 5.1e-21 104.4 94 58.5
Gorai.008G257500 Gossypium raimondii HOM05D005799 ORTHO05D007150 5.1e-21 104.4 94 58.5
Pp3c1_32590 Physcomitrium patens HOM05D005799 ORTHO05D007150 5.1e-21 104.4 94 58.5
Sp6g06740 Schrenkiella parvula HOM05D005799 ORTHO05D007150 5.1e-21 104.4 69 76.8
COL.COLO4_10780 Corchorus olitorius HOM05D005799 ORTHO05D007150 6.7e-21 104.0 94 58.5
Prupe.5G128200 Prunus persica HOM05D005799 ORTHO05D007150 6.7e-21 104.0 94 60.6
SHI06892 Sapria himalayana HOM05D005799 ORTHO05D007150 6.7e-21 104.0 69 76.8
SGA_v2.0_scaffold104G30268 Striga asiatica HOM05D005799 ORTHO05D007150 6.7e-21 104.0 69 75.4
Zm00001eb250310 Zea mays HOM05D005799 ORTHO05D007150 6.7e-21 104.0 69 76.8
FvH4_5g11050 Fragaria vesca HOM05D005799 ORTHO05D007150 8.7e-21 103.6 94 59.6
FAN04G0556 Fragaria x ananassa HOM05D005799 ORTHO05D007150 8.7e-21 103.6 94 59.6
RcHm_v2.0_Chr7g0186751 Rosa chinensis HOM05D005799 ORTHO05D007150 8.7e-21 103.6 94 59.6
THA.LOC104806452 Tarenaya hassleriana HOM05D005799 ORTHO05D007150 8.7e-21 103.6 69 75.4
DCAR_006533 Daucus carota HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
ECA246G3622 Erigeron canadensis HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
HanXRQChr17g0534781 Helianthus annuus HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
Lsat_1_v5_gn_3_13660 Lactuca sativa HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
Lj3g0012917 Lotus japonicus HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
MD14G1124400 Malus domestica HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 59.6
PSO063G0471 Papaver somniferum HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
PSO782G0762 Papaver somniferum HOM05D005799 ORTHO05D007150 1.1e-20 103.2 94 58.5
CANSAT21G1656 Cannabis sativa HOM05D005799 ORTHO05D007150 2.5e-20 102.1 94 57.4
Sed0014517 Sechium edule HOM05D005799 ORTHO05D007150 2.5e-20 102.1 69 73.9
MD06G1116900 Malus domestica HOM05D005799 ORTHO05D007150 3.3e-20 101.7 94 58.5
Atru.chr9.1907 Acer truncatum HOM05D005799 ORTHO05D007150 4.3e-20 101.3 94 56.4
CBR_g39884 Chara braunii HOM05D005799 ORTHO05D007150 4.3e-20 101.3 94 57.4
RhsimUnG0077100 Rhododendron simsii HOM05D005799 ORTHO05D007150 5.6e-20 100.9 103 55.3
Medtr2g099870 Medicago truncatula HOM05D005799 ORTHO05D007150 9.6e-20 100.1 69 73.9
arahy.Tifrunner.gnm1.ann1.3PG13R Arachis hypogaea HOM05D005799 ORTHO05D007150 3.7e-19 98.2 98 57.1
Hma1.2p1_0440F.1_g153730 Hydrangea macrophylla HOM05D005799 ORTHO05D007150 3.1e-18 95.1 93 54.8
FAN18G1901 Fragaria x ananassa HOM05D005799 ORTHO05D007150 4.0e-18 94.7 96 57.3
FAN13G1348 Fragaria x ananassa HOM05D005799 ORTHO05D007150 3.4e-17 91.7 90 56.7
Haze_26998 Corylus avellana HOM05D005799 ORTHO05D007150 5.8e-17 90.9 70 68.6
Haze_26999 Corylus avellana HOM05D005799 ORTHO05D007150 5.8e-17 90.9 70 68.6
Cre06.g295600 Chlamydomonas reinhardtii HOM05D005799 ORTHO05D007150 1.0e-16 90.1 69 62.3
FAN08G2876 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.3e-16 89.7 86 57.0
MELO3C013781.2 Cucumis melo HOM05D005799 ORTHO05D007150 1.5e-09 66.2 75 45.3
RcHm_v2.0_Chr7g0186261 Rosa chinensis HOM05D005799 ORTHO05D007150 2.7e-06 55.5 48 58.3
Rhsim09G0150800 Rhododendron simsii HOM05D005232 ORTHO05D006389 6.1e-06 54.3 99 34.3
vmacro04863 Vaccinium macrocarpon HOM05D005232 ORTHO05D006389 6.1e-06 54.3 99 34.3


User provided reference genes

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