Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 9.7e-158 560.1 278 100.0
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.9e-116 422.9 251 82.1
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.5e-115 418.7 278 74.5
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 6.0e-115 417.9 266 77.1
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.1e-113 413.7 272 75.0
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.5e-113 413.3 272 75.0
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.5e-113 413.3 245 80.4
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.9e-113 412.9 245 80.8
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.9e-113 412.9 245 80.8
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.5e-113 412.5 245 80.4
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.5e-113 412.5 245 80.4
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.5e-113 412.5 249 80.3
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 4.3e-113 411.8 278 73.4
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 5.6e-113 411.4 283 71.4
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 7.3e-113 411.0 276 75.0
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 9.5e-113 410.6 245 79.6
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-112 410.2 254 78.7
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.2e-112 410.2 266 76.3
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.6e-112 409.8 274 73.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-112 409.5 254 78.3
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.8e-112 409.1 267 75.7
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.6e-112 408.7 280 73.2
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.6e-112 408.7 247 79.8
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 3.6e-112 408.7 260 77.3
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 2.4e-111 406.0 239 80.3
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.1e-111 405.6 248 77.8
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 4.0e-111 405.2 239 80.8
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 4.0e-111 405.2 250 77.2
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 4.0e-111 405.2 242 79.3
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 6.8e-111 404.4 270 74.4
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 6.8e-111 404.4 242 78.5
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.2e-110 403.7 280 72.1
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.2e-110 403.7 237 79.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.5e-110 403.3 252 76.2
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.0e-110 402.9 248 77.8
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 4.4e-110 401.7 280 71.8
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 7.6e-110 401.0 260 73.5
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.3e-109 400.2 247 77.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.3e-109 400.2 275 73.1
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.7e-109 399.8 242 77.7
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.2e-109 399.4 245 78.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 2.9e-109 399.1 250 77.6
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 3.8e-109 398.7 243 79.0
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 6.4e-109 397.9 242 77.3
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 8.4e-109 397.5 242 76.9
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.1e-108 397.1 272 71.3
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.4e-108 396.7 240 79.2
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.9e-108 396.4 251 76.1
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.4e-108 396.0 250 77.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 2.4e-108 396.0 254 74.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 3.2e-108 395.6 272 70.2
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 5.4e-108 394.8 242 77.7
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 7.1e-108 394.4 248 77.4
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 7.1e-108 394.4 248 77.4
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 9.2e-108 394.0 265 73.6
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.6e-107 393.3 245 77.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 2.7e-107 392.5 247 77.3
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 2.7e-107 392.5 247 77.3
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.7e-107 392.5 273 72.2
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 6.0e-107 391.3 250 75.6
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 7.8e-107 391.0 248 75.4
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.0e-106 390.6 275 70.5
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.7e-106 389.8 249 75.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 2.3e-106 389.4 249 73.9
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 3.0e-106 389.0 248 76.2
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.0e-106 389.0 276 72.1
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 3.0e-106 389.0 270 71.9
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 3.9e-106 388.7 248 74.6
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 6.6e-106 387.9 272 71.3
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 6.6e-106 387.9 247 75.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.1e-105 387.1 261 72.4
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-105 387.1 238 77.3
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.1e-105 387.1 238 75.6
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.5e-105 386.7 263 71.9
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 4.3e-105 385.2 279 69.2
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 4.3e-105 385.2 223 81.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.3e-105 385.2 254 74.0
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 5.6e-105 384.8 275 71.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 9.6e-105 384.0 237 76.8
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 9.6e-105 384.0 267 70.4
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 9.6e-105 384.0 245 75.1
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.6e-104 383.3 238 76.5
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-104 382.9 237 74.7
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.1e-104 382.9 245 75.1
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 2.8e-104 382.5 238 74.8
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 3.6e-104 382.1 245 74.3
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.6e-104 382.1 255 72.9
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 8.1e-104 380.9 241 75.5
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.4e-103 380.2 262 72.1
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.4e-103 379.4 268 70.5
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.4e-103 379.4 237 75.9
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 6.9e-103 377.9 248 73.0
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 6.9e-103 377.9 238 75.2
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.6e-102 375.9 270 68.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.6e-102 375.9 270 68.9
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 7.6e-102 374.4 244 73.0
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.2e-101 372.9 265 70.9
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.9e-101 372.5 245 74.3
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 8.4e-101 370.9 244 72.5
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.4e-100 370.2 244 73.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.3e-100 367.5 225 77.8
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.5e-99 365.5 238 72.3
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-98 364.0 238 70.2
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.0e-98 364.0 368 53.5
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.4e-95 353.6 261 69.0
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.8e-95 353.2 222 74.3
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.9e-93 345.9 223 74.0
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.4e-92 342.8 255 67.5
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 4.6e-91 338.6 248 68.1
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.7e-90 334.7 243 68.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 7.4e-89 331.3 248 66.1
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.6e-88 330.1 240 65.8
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 2.8e-88 329.3 247 67.2
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 3.1e-87 325.9 238 65.1
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 3.1e-87 325.9 254 64.2
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-80 303.5 189 75.1
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.4e-79 300.4 235 59.6
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.6e-78 296.2 176 81.8
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.0e-77 294.3 177 78.0
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 8.7e-74 281.2 249 59.0
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 3.3e-73 279.3 224 62.5
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-71 274.2 282 53.2
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.8e-69 265.8 178 70.8
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.8e-64 249.6 221 56.6
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.8e-63 246.9 255 52.2
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.1e-63 246.1 253 51.0
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.2e-59 234.2 173 64.7
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-56 223.8 163 69.9
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.8e-55 220.3 135 79.3
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-51 207.6 270 43.3
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 4.7e-51 205.7 124 79.0
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.7e-48 196.1 229 41.0
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.3e-47 192.2 125 73.6
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 5.9e-46 188.7 219 44.7
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.6e-43 180.6 112 75.0
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.7e-43 179.9 220 41.4
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.1e-35 153.7 87 81.6
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 9.8e-33 144.8 113 66.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 6.3e-32 142.1 86 76.7
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-30 136.0 152 50.7
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-29 134.8 103 62.1
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 7.0e-23 112.1 93 59.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.7e-22 110.2 244 30.3
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.9e-21 106.7 82 65.9
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.9e-21 106.3 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 8.3e-16 88.6 86 54.7
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-12 78.2 167 38.3
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.1e-12 78.2 46 80.4
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 4.0e-10 69.7 70 51.4
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-08 64.3 68 51.5
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.7e-08 63.2 221 32.6
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 4.9e-08 62.8 207 28.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.2e-07 58.5 179 28.5
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 1.6e-06 57.8 210 31.0
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 2.7e-06 57.0 35 74.3
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.5e-06 56.6 207 28.5
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.5e-06 56.6 196 31.1
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 7.8e-06 55.5 196 27.6


User provided reference genes

Program Settings