Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 2.1e-93 345.9 206 100.0
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.3e-46 189.1 201 49.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 2.2e-45 186.4 196 48.5
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.8e-45 185.3 201 46.8
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.8e-45 185.3 201 48.3
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 8.2e-45 184.5 150 58.7
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.4e-44 183.7 198 47.5
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.8e-44 183.3 200 47.5
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 7.0e-44 181.4 206 49.0
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 7.0e-44 181.4 208 47.6
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.6e-43 180.3 211 46.0
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 4.5e-43 178.7 209 53.6
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 5.9e-43 178.3 203 47.8
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 5.9e-43 178.3 212 45.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 7.7e-43 177.9 147 58.5
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 1.0e-42 177.6 204 52.9
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-42 177.6 153 56.9
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.0e-42 177.6 210 47.1
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.0e-42 177.6 151 57.6
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.3e-42 177.2 144 59.0
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.9e-42 176.0 215 47.9
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.9e-42 176.0 153 56.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 2.9e-42 176.0 206 49.5
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 3.8e-42 175.6 148 58.1
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.8e-42 175.6 142 60.6
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 5.0e-42 175.3 205 45.9
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 6.5e-42 174.9 207 47.8
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 8.5e-42 174.5 199 47.2
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.1e-41 174.1 202 47.5
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.1e-41 174.1 153 55.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.9e-41 173.3 140 60.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 2.5e-41 172.9 220 46.4
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 2.5e-41 172.9 203 47.3
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.5e-41 172.9 140 60.0
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.2e-41 172.6 208 54.3
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 3.2e-41 172.6 197 49.2
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 3.2e-41 172.6 148 58.8
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 3.2e-41 172.6 148 58.8
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 5.5e-41 171.8 148 55.4
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 5.5e-41 171.8 144 59.0
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 7.2e-41 171.4 214 47.7
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 7.2e-41 171.4 214 44.4
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.2e-40 170.6 147 57.1
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.7e-40 169.5 142 57.7
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 2.7e-40 169.5 145 57.2
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.7e-40 169.5 203 46.8
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.7e-40 169.5 223 42.2
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 3.6e-40 169.1 217 44.2
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.6e-40 169.1 207 46.4
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 3.6e-40 169.1 140 59.3
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.7e-40 168.7 145 56.6
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 6.1e-40 168.3 148 55.4
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.1e-40 168.3 204 54.4
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 6.1e-40 168.3 204 45.6
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 6.1e-40 168.3 205 45.9
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 8.0e-40 167.9 196 46.9
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.0e-39 167.5 196 46.4
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.0e-39 167.5 196 46.4
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.0e-39 167.5 145 55.9
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 1.0e-39 167.5 145 55.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 1.0e-39 167.5 201 46.8
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.8e-39 166.8 203 45.3
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 2.3e-39 166.4 196 46.4
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.0e-39 166.0 201 45.3
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 4.0e-39 165.6 199 42.7
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 5.2e-39 165.2 226 46.0
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 5.2e-39 165.2 141 57.4
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.5e-38 163.7 218 44.0
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 3.4e-38 162.5 218 43.6
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 5.7e-38 161.8 220 43.6
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 7.5e-38 161.4 199 51.3
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.3e-37 160.6 156 54.5
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 2.8e-37 159.5 207 42.5
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 3.7e-37 159.1 186 46.2
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 6.3e-37 158.3 201 52.2
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 6.3e-37 158.3 136 56.6
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 8.3e-37 157.9 201 42.3
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.4e-36 157.1 175 52.0
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.4e-36 157.1 141 63.8
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 2.4e-36 156.4 158 51.9
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.2e-35 154.1 212 49.1
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 2.7e-35 152.9 244 39.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 4.5e-35 152.1 233 40.8
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-34 151.0 153 51.0
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.1e-33 147.5 136 55.1
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 4.2e-33 145.6 125 59.2
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.2e-32 144.1 235 37.9
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 2.1e-32 143.3 203 42.4
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 4.7e-32 142.1 239 37.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 5.2e-31 138.7 275 36.0
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 3.4e-30 136.0 138 50.0
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 5.7e-30 135.2 124 54.0
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 7.5e-30 134.8 111 58.6
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.2e-29 133.3 211 38.9
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.5e-25 120.6 200 44.0
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.8e-23 111.7 127 51.2
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.8e-22 108.6 139 46.8
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 1.1e-20 104.4 145 38.6
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.0e-18 97.8 127 45.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 4.3e-17 92.4 124 43.5
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 2.6e-14 83.2 81 49.4
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 1.3e-13 80.9 53 73.6
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 7.0e-12 75.1 89 43.8
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.3e-10 70.1 72 47.2
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-09 67.4 45 64.4
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 1.5e-09 67.4 72 44.4
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.5e-09 67.4 85 38.8
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.5e-09 67.4 85 38.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.0e-06 57.0 68 44.1


User provided reference genes

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