Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1845.5 1012 100.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1348.2 1016 72.4
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1342.0 1018 71.2
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1322.0 1005 71.9
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1315.8 994 71.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1310.0 1008 68.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1289.6 1011 67.4
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1276.2 1028 66.2
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1274.2 1005 67.5
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1273.5 1001 68.7
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1271.5 1018 68.0
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1268.1 1015 66.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1264.6 1025 65.6
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 1005 68.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1262.3 1016 66.1
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1261.5 1016 66.0
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1258.0 992 65.7
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1257.3 1017 64.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1256.5 1016 65.8
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1252.3 1021 67.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1251.9 1004 67.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1251.9 1031 65.9
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1022 66.5
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1017 65.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1250.3 945 69.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1243.4 991 65.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1242.3 978 65.3
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1241.9 1033 65.7
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1240.3 1005 64.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1239.9 1014 65.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1238.0 979 67.0
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 1012 64.4
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1236.1 1017 65.3
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 991 64.8
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 1012 66.0
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1232.2 1003 65.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1227.2 1021 65.7
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1226.1 1028 67.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1223.4 1009 63.3
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1223.0 1012 63.2
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1222.6 945 68.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1221.8 951 66.8
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1221.1 1015 65.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1220.7 1013 64.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1219.1 956 65.9
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1218.8 955 68.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1218.4 1026 67.2
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1217.2 1016 64.6
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1214.9 1022 63.5
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1213.7 1023 64.5
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1213.4 987 63.5
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1213.0 1014 64.0
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1209.9 1003 63.7
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1207.2 1021 63.5
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1206.4 1027 62.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1206.0 1013 64.6
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1024 63.6
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1204.5 1025 64.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1204.5 1033 64.1
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1202.2 965 65.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1200.3 1019 63.8
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1199.1 1003 64.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1194.9 1004 62.2
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 1014 63.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 1050 62.8
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1188.3 939 65.9
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1184.5 933 65.9
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1177.9 1001 63.1
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1176.4 1015 64.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1173.7 988 62.0
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1173.3 980 62.9
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1173.3 943 67.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 1031 64.4
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1171.0 1009 61.4
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1171.0 963 63.4
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1170.6 1012 64.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1169.8 1007 61.6
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1168.3 937 64.2
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1168.3 1009 61.0
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1168.3 945 66.0
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1167.9 937 64.2
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1167.5 1009 61.0
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1166.4 1009 61.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1159.8 937 63.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1159.1 1013 64.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1158.3 949 63.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1157.9 973 62.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1155.6 1007 62.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1154.4 1042 60.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1152.5 1021 60.4
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1151.7 930 63.5
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1151.0 945 63.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1133.2 984 60.9
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1125.2 947 62.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1115.5 1045 57.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1111.3 1004 60.2
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1105.9 1038 59.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1105.1 1009 58.9
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1075.1 888 64.3
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.8e-310 1069.3 794 70.0
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.5e-309 1066.2 788 72.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.7e-308 1062.8 1028 55.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.7e-306 1055.4 839 63.9
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.1e-304 1050.0 1001 56.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.9e-304 1049.3 940 58.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.8e-302 1042.7 788 71.3
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 9.0e-294 1013.8 1000 52.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.4e-293 1011.9 992 54.9
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 6.4e-292 1007.7 1015 54.9
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.9e-283 979.5 998 52.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.8e-276 955.3 943 53.2
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.0e-273 945.7 706 70.8
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-255 887.1 818 57.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.1e-246 855.9 752 65.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 6.1e-242 841.6 648 70.1
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 3.6e-234 815.8 945 46.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.0e-212 742.3 615 65.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.4e-208 729.6 619 65.3
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.1e-198 696.0 689 53.4
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.9e-191 673.3 563 60.2
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 7.1e-190 668.7 605 63.0
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.1e-187 661.4 596 57.0
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.9e-183 646.7 970 43.2
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.4e-183 645.2 539 65.9
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.9e-165 585.5 567 55.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.3e-164 584.7 452 70.8
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.4e-137 494.2 1000 33.4
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 9.1e-137 492.3 600 44.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.6e-133 481.5 947 31.4
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-124 452.2 581 47.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.9e-118 431.4 971 30.4
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.0e-117 426.0 362 61.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 9.1e-113 412.5 341 59.2
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 7.7e-112 409.5 318 66.0
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.0e-100 370.5 272 71.7
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.0e-100 370.5 316 63.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 5.8e-99 366.7 383 55.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.9e-97 361.7 560 42.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.0e-96 358.2 406 46.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.1e-94 352.4 560 43.0
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 5.6e-94 350.1 288 62.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.9e-90 337.8 277 63.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 8.6e-87 326.2 265 63.8
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.7e-85 320.5 569 38.5
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.2e-82 311.6 278 62.6
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 3.9e-71 274.2 247 58.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.3e-70 271.2 574 34.8
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.6e-69 267.7 220 62.3
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 9.0e-68 263.1 219 63.0
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.4e-67 260.8 300 52.3
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 4.9e-66 257.3 244 55.7
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.7e-64 251.5 425 40.7
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.9e-62 245.4 189 69.3
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.6e-59 233.4 243 56.8
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 4.6e-56 224.2 310 43.2
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-52 212.6 251 51.4
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.8e-51 207.2 428 37.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 7.1e-49 200.3 419 37.2
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-48 199.5 210 55.2
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.5e-46 191.8 134 68.7
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.8e-42 177.9 164 62.8
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 2.7e-40 171.8 158 60.8
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-39 169.9 202 51.5
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.0e-34 153.3 124 74.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 9.4e-33 146.7 92 75.0
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 3.6e-32 144.8 98 70.4
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 6.1e-32 144.1 235 38.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.3e-30 138.3 126 57.1
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 9.7e-30 136.7 103 66.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.1e-28 131.7 172 48.8
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.1e-28 130.2 174 47.7
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.1e-24 117.5 73 75.3
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.1e-24 117.5 73 75.3
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 6.7e-23 114.0 121 47.9
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 3.3e-22 111.7 172 41.9
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 4.4e-22 111.3 79 65.8
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 9.1e-20 103.6 66 75.8
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 5.0e-18 97.8 206 35.4
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.6e-16 92.8 163 38.7
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.4e-14 84.7 108 42.6
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 1.2e-06 60.1 127 35.4
SEGI_22189 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 7.5e-06 57.4 52 53.8


User provided reference genes

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