Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.8e-87 325.9 164 100.0
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 68.9
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 68.9
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 68.9
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 68.3
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 64.6
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.7e-56 221.9 164 66.5
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 4.8e-56 221.5 164 67.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 6.3e-56 221.1 164 66.5
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 6.3e-56 221.1 164 67.1
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 8.3e-56 220.7 164 67.7
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.1e-55 220.3 164 67.1
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 67.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.8e-55 219.5 164 67.7
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.4e-55 219.2 164 67.1
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.4e-55 219.2 164 67.1
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 3.1e-55 218.8 164 64.0
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 3.1e-55 218.8 164 67.1
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 3.1e-55 218.8 164 64.0
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.1e-55 218.4 164 67.1
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 4.1e-55 218.4 164 64.6
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 5.4e-55 218.0 164 67.1
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 7.0e-55 217.6 164 67.1
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 9.1e-55 217.2 164 66.5
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 66.5
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 65.9
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 2.0e-54 216.1 164 65.9
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.0e-54 216.1 164 66.5
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.7e-54 215.7 164 63.4
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.7e-54 215.7 164 66.5
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.7e-54 215.7 164 67.7
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 3.5e-54 215.3 164 66.5
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 3.5e-54 215.3 164 67.7
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 64.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 65.9
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 5.9e-54 214.5 164 63.4
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 7.7e-54 214.2 164 64.0
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 7.7e-54 214.2 164 65.9
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 7.7e-54 214.2 164 67.1
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.3e-53 213.4 164 64.0
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.3e-53 213.4 164 63.4
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.3e-53 213.4 166 65.7
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.7e-53 213.0 164 67.1
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 64.0
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 65.2
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 64.0
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 3.8e-53 211.8 164 65.2
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 5.0e-53 211.5 164 62.2
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 5.0e-53 211.5 164 66.5
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 5.0e-53 211.5 164 63.4
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 6.5e-53 211.1 164 63.4
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 6.5e-53 211.1 164 64.6
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 6.5e-53 211.1 164 64.6
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 6.5e-53 211.1 164 64.6
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 6.5e-53 211.1 162 63.0
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 8.6e-53 210.7 164 64.6
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-52 210.3 164 63.4
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 1.1e-52 210.3 164 62.8
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 1.9e-52 209.5 164 63.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 2.5e-52 209.1 164 61.0
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.5e-52 209.1 166 65.1
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 2.5e-52 209.1 166 63.9
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.5e-52 209.1 164 62.2
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.3e-52 208.8 164 61.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 5.5e-52 208.0 164 64.0
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 7.2e-52 207.6 164 64.6
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 9.5e-52 207.2 164 62.8
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 9.5e-52 207.2 164 63.4
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.2e-51 206.8 164 62.2
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.1e-51 206.1 164 61.6
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 2.1e-51 206.1 164 63.4
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 6.1e-51 204.5 188 56.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.0e-50 203.8 164 63.4
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.4e-50 203.4 164 62.2
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.8e-50 203.0 164 61.0
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 2.3e-50 202.6 164 62.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.0e-50 201.8 159 62.9
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 5.2e-50 201.4 164 61.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 8.9e-50 200.7 164 59.8
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 8.9e-50 200.7 164 61.6
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 8.9e-50 200.7 164 61.6
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.5e-49 199.9 164 58.5
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.0e-49 199.5 164 59.8
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.6e-49 199.1 164 58.5
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.6e-49 199.1 164 61.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.6e-49 199.1 159 61.6
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 4.4e-49 198.4 164 59.1
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 7.5e-49 197.6 164 57.9
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 7.5e-49 197.6 164 57.9
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 7.5e-49 197.6 164 59.8
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.7e-48 196.4 164 57.9
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 4.9e-48 194.9 164 57.9
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 6.3e-48 194.5 164 58.5
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.4e-47 193.4 167 59.9
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.4e-47 192.6 159 61.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.1e-47 192.2 164 56.1
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.1e-47 192.2 164 56.1
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 4.1e-47 191.8 164 56.1
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 7.0e-47 191.0 162 56.8
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 3.5e-46 188.7 173 54.9
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 3.5e-46 188.7 164 57.3
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.8e-46 187.6 170 57.6
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.8e-46 187.6 170 57.6
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.1e-44 183.7 171 56.1
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 3.3e-44 182.2 191 49.2
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 9.5e-44 180.6 174 55.2
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.6e-43 179.9 164 51.8
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.1e-43 179.5 185 50.8
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 6.1e-43 177.9 193 49.2
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.0e-37 160.6 164 53.7
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.1e-36 157.1 167 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 7.3e-36 154.5 154 50.0
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.3e-36 154.5 132 58.3
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.1e-35 152.9 222 45.5
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.8e-34 149.8 133 54.1
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.8e-34 149.8 168 50.0
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 4.0e-34 148.7 117 66.7
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 8.9e-34 147.5 168 47.0
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 3.4e-33 145.6 131 48.1
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 7.0e-31 137.9 125 56.0
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 4.6e-30 135.2 122 50.0
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.7e-29 133.3 98 68.4
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 2.3e-29 132.9 83 77.1
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 1.1e-26 124.0 92 68.5
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.4e-26 123.6 82 73.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 8.9e-26 120.9 83 71.1
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.6e-25 119.4 156 42.9
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 5.8e-25 118.2 84 69.0
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 2.8e-19 99.4 66 69.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 2.8e-19 99.4 82 57.3
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 8.1e-19 97.8 95 60.0
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 5.2e-18 95.1 101 43.6
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 6.4e-16 88.2 76 57.9
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.9e-15 86.7 119 34.5
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 7.8e-14 81.3 82 46.3
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.6e-11 72.4 45 77.8
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-11 72.0 51 64.7
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 5.2e-10 68.6 52 51.9
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-09 67.4 48 70.8
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 3.4e-09 65.9 76 52.6
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 9.9e-09 64.3 93 46.2
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 1.7e-08 63.5 47 57.4
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 6.4e-08 61.6 46 56.5
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 2.1e-06 56.6 46 50.0


User provided reference genes

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