Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.1e-90 334.0 173 100.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.7e-43 179.9 190 56.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.0e-40 170.6 182 51.6
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.0e-40 170.6 192 51.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 5.7e-39 164.9 193 53.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.8e-38 161.8 191 50.3
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.1e-37 159.1 198 49.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 3.1e-37 159.1 190 48.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 4.1e-37 158.7 184 49.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.1e-37 158.7 196 51.0
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.3e-37 158.3 193 48.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 5.3e-37 158.3 182 49.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.2e-36 157.1 216 44.4
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 2.0e-36 156.4 187 49.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.9e-35 152.5 187 48.7
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 2.9e-35 152.5 208 45.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 8.5e-35 151.0 197 47.7
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.5e-35 151.0 195 45.6
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.4e-34 150.2 192 47.9
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 3.2e-34 149.1 191 47.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.2e-34 149.1 206 44.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 4.2e-34 148.7 188 47.9
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.2e-34 148.7 187 48.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.2e-34 148.7 186 48.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.5e-34 148.3 186 47.8
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 7.2e-34 147.9 184 51.6
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.4e-34 147.5 187 48.1
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-33 146.7 204 46.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.7e-33 145.2 182 47.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.0e-32 144.1 207 46.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.0e-32 144.1 206 46.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.0e-32 142.5 187 46.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-32 142.1 178 47.8
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-32 141.7 208 42.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 6.7e-32 141.4 181 45.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-32 141.4 214 44.9
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 8.8e-32 141.0 178 47.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 8.8e-32 141.0 178 44.4
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 8.8e-32 141.0 191 47.1
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.1e-31 140.6 186 45.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.1e-31 140.6 181 50.3
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.1e-31 140.6 203 43.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.5e-31 140.2 186 44.1
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.0e-31 139.8 201 45.3
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.6e-31 139.4 204 42.2
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.3e-31 139.0 218 40.4
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.4e-31 138.7 208 42.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.4e-31 138.7 212 42.0
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 4.4e-31 138.7 193 46.6
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 5.7e-31 138.3 183 48.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.7e-31 137.5 193 44.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.7e-30 136.7 210 41.9
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-30 134.8 185 44.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 6.3e-30 134.8 185 44.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 6.3e-30 134.8 181 46.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.3e-30 134.8 208 42.8
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 8.2e-30 134.4 178 46.6
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 8.2e-30 134.4 186 43.0
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.4e-29 133.7 214 45.8
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-29 133.3 185 44.3
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.8e-29 133.3 190 42.1
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-29 132.9 185 44.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-29 132.9 185 44.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-29 132.9 185 44.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.4e-29 132.9 195 41.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.1e-29 132.5 185 43.2
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.1e-29 132.5 196 46.4
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 3.1e-29 132.5 192 43.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.1e-29 132.5 192 44.8
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-29 132.1 178 46.6
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.3e-29 131.7 212 42.9
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 5.3e-29 131.7 213 40.8
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.0e-29 131.3 181 45.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 7.0e-29 131.3 188 42.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.1e-29 131.0 210 41.0
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.0e-28 129.8 162 48.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.6e-28 129.4 212 41.5
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.5e-28 129.0 218 44.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.5e-28 129.0 222 35.6
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.7e-28 127.9 184 47.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.7e-28 127.9 184 47.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.0e-27 127.5 212 40.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-27 127.5 210 41.0
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.3e-27 127.1 195 41.5
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-27 126.7 200 41.0
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.9e-27 125.9 217 38.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.8e-27 125.6 177 43.5
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 5.0e-27 125.2 179 42.5
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 6.5e-27 124.8 198 44.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 6.5e-27 124.8 200 43.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.5e-27 124.4 211 40.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.5e-27 124.4 179 47.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-26 124.0 168 44.6
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.5e-26 123.6 191 45.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.5e-26 123.6 201 41.8
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.2e-26 122.5 212 39.6
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.2e-26 122.5 184 41.8
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-26 122.1 178 46.6
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.2e-26 122.1 178 46.6
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 7.2e-26 121.3 202 42.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.2e-26 121.3 197 42.1
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.2e-25 120.6 178 46.1
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.6e-25 120.2 183 44.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-25 119.8 203 39.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.7e-25 119.4 213 40.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-25 119.0 169 43.8
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-25 119.0 168 42.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 4.7e-25 118.6 201 40.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 8.0e-25 117.9 187 42.2
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.4e-24 117.1 163 48.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.4e-24 117.1 203 37.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-24 115.9 171 43.3
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.1e-23 114.0 186 41.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.0e-23 113.2 213 35.7
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.3e-23 112.5 190 40.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.7e-23 111.7 216 35.6
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.7e-23 111.7 220 36.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 4.8e-22 108.6 165 45.5
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.8e-21 106.7 185 37.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.1e-21 105.5 202 37.1
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 7.0e-21 104.8 230 34.3
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 9.1e-21 104.4 211 35.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-20 103.2 241 33.2
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.6e-20 102.8 173 41.6
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.5e-20 102.1 180 38.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 5.9e-20 101.7 210 37.1
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-20 101.3 180 36.7
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.3e-19 100.5 184 38.6
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.7e-19 100.1 195 41.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.2e-19 99.8 212 35.4
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-19 99.0 190 35.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 5.0e-19 98.6 181 35.9
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.5e-19 98.2 178 34.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 8.5e-19 97.8 186 35.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 8.5e-19 97.8 186 35.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 8.5e-19 97.8 186 35.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.1e-18 97.4 140 45.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.5e-18 97.1 245 30.6
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.5e-18 97.1 206 36.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.5e-18 96.3 183 37.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.2e-18 95.9 182 35.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.2e-18 95.5 185 37.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 5.5e-18 95.1 189 36.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.2e-17 94.0 189 39.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.1e-17 93.2 193 37.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.6e-17 92.4 131 43.5
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.4e-16 90.5 200 33.5
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.8e-16 90.1 192 33.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.0e-16 89.0 187 33.7
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 6.8e-16 88.2 205 34.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.7e-15 85.1 74 62.2
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.7e-15 85.1 231 30.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.8e-15 84.3 176 38.6
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.3e-14 84.0 81 53.1
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.2e-14 83.2 162 37.7
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-14 82.4 171 35.1
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.7e-14 82.4 171 35.1
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-14 81.6 168 35.7
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 6.3e-14 81.6 168 35.7
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.4e-13 78.6 102 41.2
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 5.4e-13 78.6 160 35.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 7.0e-13 78.2 143 40.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-12 76.3 171 35.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.5e-11 71.6 70 55.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.5e-10 70.5 179 33.5
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.9e-10 70.1 178 36.0
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.0e-09 64.7 166 33.1
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.3e-08 63.2 218 28.0
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.8e-08 61.6 165 30.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.6e-07 59.7 167 29.9
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.4e-07 58.9 117 31.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 4.4e-07 58.9 196 30.1
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 9.8e-07 57.8 179 30.7
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.7e-06 57.0 160 32.5
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 2.8e-06 56.2 146 30.1
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 4.9e-06 55.5 185 26.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.3e-06 55.1 187 29.4


User provided reference genes

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