Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.5e-245 851.7 434 100.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.0e-185 653.7 423 79.2
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 6.6e-185 651.0 426 77.9
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.2e-183 646.7 388 84.8
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 6.1e-183 644.4 381 84.3
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.0e-182 643.7 381 85.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.3e-182 642.5 386 83.7
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.8e-182 641.0 378 84.7
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.8e-182 641.0 399 80.5
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 8.9e-182 640.6 421 77.9
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.9e-182 640.6 445 76.0
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-181 640.2 388 83.2
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-181 639.8 441 75.3
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.0e-181 639.4 441 76.2
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.6e-181 639.0 378 84.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.4e-181 638.6 397 81.6
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.4e-181 638.6 387 82.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.4e-181 638.3 435 76.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.4e-181 638.3 384 82.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.4e-181 638.3 446 75.1
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.4e-181 638.3 384 83.1
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-181 637.5 420 78.8
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.5e-181 637.5 379 83.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 9.8e-181 637.1 379 83.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 9.8e-181 637.1 379 83.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 9.8e-181 637.1 384 82.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.3e-180 636.7 381 83.2
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.7e-180 636.3 383 83.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.8e-180 635.6 387 83.5
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 4.9e-180 634.8 425 76.5
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 6.3e-180 634.4 397 80.6
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 8.3e-180 634.0 386 82.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 8.3e-180 634.0 376 83.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 8.3e-180 634.0 378 83.9
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-179 633.6 388 81.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.1e-179 633.6 386 81.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.4e-179 633.3 441 75.1
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.4e-179 633.3 438 74.7
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.8e-179 632.9 387 81.9
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.4e-179 632.5 378 83.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 3.1e-179 632.1 387 81.9
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.1e-179 632.1 414 78.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 4.1e-179 631.7 397 80.4
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 4.1e-179 631.7 416 78.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.4e-179 631.3 387 81.7
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 7.0e-179 630.9 387 81.4
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 9.2e-179 630.6 387 81.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.2e-178 630.2 397 80.6
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.6e-178 629.8 385 81.0
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.0e-178 629.4 379 82.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.0e-178 629.4 384 82.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.0e-178 629.4 381 82.7
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.5e-178 628.6 435 75.6
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.5e-178 628.6 444 74.8
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 3.5e-178 628.6 378 83.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 5.9e-178 627.9 381 82.4
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 5.9e-178 627.9 381 82.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 5.9e-178 627.9 380 82.4
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 5.9e-178 627.9 379 82.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.0e-177 627.1 441 73.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.3e-177 626.7 387 81.4
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.9e-177 625.5 379 81.8
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.9e-177 625.5 438 74.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 5.0e-177 624.8 379 81.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.0e-177 624.8 421 77.2
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.6e-177 624.4 387 80.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 6.6e-177 624.4 378 83.1
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 6.6e-177 624.4 377 83.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 6.6e-177 624.4 378 82.3
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 8.6e-177 624.0 381 81.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-176 623.6 385 80.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-176 623.6 381 81.6
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.1e-176 623.6 447 72.9
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-176 622.9 381 81.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.3e-176 622.1 441 74.8
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.3e-176 621.7 427 74.5
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.3e-176 621.7 443 73.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 5.6e-176 621.3 381 81.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 7.3e-176 620.9 381 81.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 9.5e-176 620.5 385 81.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-175 619.8 443 73.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.6e-175 619.8 430 76.3
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.1e-175 619.4 380 81.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.6e-175 618.6 387 79.6
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 6.1e-175 617.8 377 82.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 6.1e-175 617.8 380 82.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 6.1e-175 617.8 380 82.1
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.4e-174 616.7 396 78.3
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.8e-174 616.3 381 81.1
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.3e-174 615.9 438 73.7
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.1e-174 615.5 444 72.7
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.1e-174 615.5 380 81.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.0e-174 615.1 431 73.1
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.2e-174 614.8 378 81.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 6.8e-174 614.4 433 72.7
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.5e-173 613.2 433 72.5
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-173 612.8 436 72.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-173 612.8 436 72.7
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.6e-173 612.5 433 72.7
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 9.8e-173 610.5 387 78.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-172 609.0 386 79.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-172 609.0 386 79.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.9e-172 609.0 386 78.8
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.4e-171 604.7 438 73.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 9.2e-171 604.0 378 79.9
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 9.2e-171 604.0 378 79.9
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.6e-170 603.2 397 78.1
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.0e-170 601.3 375 81.1
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.3e-169 599.4 369 81.0
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 2.5e-168 595.9 435 71.5
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-168 595.1 435 71.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.3e-168 595.1 390 78.2
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 5.6e-168 594.7 381 78.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 9.5e-168 594.0 417 72.7
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 9.5e-168 594.0 417 72.7
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.8e-167 592.4 442 71.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 8.6e-161 570.9 460 65.4
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.3e-158 562.8 378 77.0
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.2e-156 556.2 325 84.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.7e-154 549.3 417 68.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.3e-153 547.0 402 68.9
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-148 530.4 313 83.7
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-147 527.3 380 73.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.1e-146 523.1 357 76.2
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.5e-146 522.3 377 69.0
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.3e-145 520.4 366 69.1
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-143 513.8 300 85.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 6.2e-143 511.5 373 66.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.3e-142 508.4 374 66.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.3e-142 508.4 370 68.1
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 9.0e-142 507.7 374 66.6
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-141 507.3 360 69.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.5e-141 506.9 359 70.5
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.7e-140 503.4 307 82.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.7e-140 503.4 390 65.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.2e-139 498.8 379 64.4
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.6e-138 495.4 360 68.1
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-136 490.7 364 65.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.9e-136 490.0 376 63.6
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 9.6e-136 487.6 355 64.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.5e-133 480.3 389 62.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 3.3e-128 462.6 358 62.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 4.5e-125 452.2 317 72.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 6.2e-119 431.8 366 61.2
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 4.1e-94 349.4 359 53.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.1e-94 349.4 298 60.4
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.4e-81 307.8 215 71.2
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.4e-70 269.2 346 42.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.5e-67 260.4 186 74.7
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 9.5e-59 231.9 160 71.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.6e-58 229.9 197 59.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 8.0e-58 228.8 139 83.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-51 207.6 117 82.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.6e-40 169.1 217 44.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.1e-38 163.3 119 69.7
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.6e-34 151.4 165 55.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.3e-31 141.7 145 57.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.1e-28 129.8 80 71.2
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.6e-26 123.6 117 55.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 6.9e-25 119.4 82 70.7
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.3e-20 105.1 76 67.1
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.5e-16 91.7 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.4e-16 90.5 94 52.1


User provided reference genes

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