Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 4.8e-182 641.3 402 100.0
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 6.0e-116 421.8 390 61.0
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.3e-115 420.6 392 55.9
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.9e-114 416.8 385 56.4
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.9e-114 416.8 392 55.6
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 1.9e-114 416.8 392 55.6
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.1e-113 413.3 389 57.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.8e-112 410.2 410 64.6
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 4.0e-112 409.1 412 60.7
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 6.9e-112 408.3 390 56.4
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 8.9e-112 407.9 340 68.8
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 8.9e-112 407.9 415 63.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 8.9e-112 407.9 386 61.4
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.6e-111 406.4 377 55.2
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 2.6e-111 406.4 381 63.0
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 3.4e-111 406.0 394 63.7
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 4.4e-111 405.6 416 65.4
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 5.8e-111 405.2 356 69.4
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 5.8e-111 405.2 401 61.1
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 7.6e-111 404.8 381 64.8
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 7.6e-111 404.8 405 59.8
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.3e-110 404.1 395 60.3
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.3e-110 404.1 392 61.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.7e-110 403.7 390 59.0
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 2.9e-110 402.9 338 68.9
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 3.8e-110 402.5 399 60.2
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 6.4e-110 401.7 395 60.5
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 8.4e-110 401.4 427 62.3
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 1.1e-109 401.0 423 58.2
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.9e-109 400.2 389 53.2
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.4e-109 399.8 400 62.8
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 2.4e-109 399.8 411 56.4
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 3.2e-109 399.4 388 57.0
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.2e-109 399.4 416 60.1
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 3.2e-109 399.4 416 64.9
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 4.2e-109 399.1 412 62.9
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 5.4e-109 398.7 389 63.8
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 5.4e-109 398.7 385 61.0
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.4e-109 398.7 385 57.9
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 7.1e-109 398.3 396 56.1
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.2e-108 397.5 406 58.9
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.2e-108 397.5 377 55.4
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 2.1e-108 396.7 357 71.4
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 2.1e-108 396.7 413 62.2
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 2.1e-108 396.7 411 62.0
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.1e-108 396.7 376 65.4
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 2.1e-108 396.7 408 55.9
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 2.7e-108 396.4 409 55.7
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.5e-108 396.0 388 61.3
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 4.6e-108 395.6 428 61.7
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 4.6e-108 395.6 408 52.9
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 6.0e-108 395.2 435 61.8
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 6.0e-108 395.2 414 58.5
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.0e-107 394.4 419 58.5
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.0e-107 392.9 375 55.5
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 3.0e-107 392.9 409 59.4
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 3.0e-107 392.9 391 60.9
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 8.7e-107 391.3 411 64.7
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.1e-106 391.0 395 61.5
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.9e-106 390.2 427 58.1
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 2.5e-106 389.8 374 56.1
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 5.6e-106 388.7 338 58.6
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 9.6e-106 387.9 426 58.7
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.6e-105 387.1 433 53.8
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.4e-104 383.3 343 57.4
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.4e-104 383.3 349 69.3
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 4.0e-104 382.5 357 60.2
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.5e-103 380.6 399 59.6
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 2.0e-103 380.2 370 60.0
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 2.6e-103 379.8 397 56.2
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 3.4e-103 379.4 387 58.1
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 4.5e-103 379.0 421 58.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 7.6e-103 378.3 394 66.0
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 9.9e-103 377.9 338 70.7
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.3e-102 377.5 399 62.4
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.3e-102 377.5 414 61.8
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 4.9e-102 375.6 395 63.5
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 4.9e-102 375.6 395 62.0
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 4.9e-102 375.6 395 63.5
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.4e-101 374.0 401 55.6
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.4e-101 374.0 401 55.6
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.9e-101 373.6 401 55.9
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.9e-101 373.6 401 55.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.9e-101 373.6 405 55.1
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 7.1e-101 371.7 437 47.1
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.6e-100 370.5 391 61.4
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.7e-100 369.8 423 62.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 2.7e-100 369.8 399 63.2
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 2.7e-100 369.8 399 61.4
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 2.7e-100 369.8 364 65.1
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.0e-99 367.9 370 54.3
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.9e-99 365.9 348 56.0
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 8.7e-99 364.8 398 57.0
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-98 364.4 404 55.7
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 2.5e-98 363.2 340 57.6
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.6e-97 360.5 425 52.5
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.8e-97 359.8 409 58.4
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-96 357.8 403 55.1
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 2.4e-96 356.7 325 65.8
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 4.0e-96 355.9 386 49.5
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 4.0e-96 355.9 336 56.8
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.0e-96 354.8 407 55.0
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 3.4e-95 352.8 337 53.4
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 4.5e-95 352.4 376 50.0
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 4.6e-92 342.4 356 54.5
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 9.6e-90 334.7 342 57.6
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-88 330.9 406 44.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.4e-88 330.1 406 44.6
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.4e-87 326.2 302 57.9
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.7e-86 323.9 322 61.8
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.7e-86 323.9 349 53.0
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-85 320.9 420 42.9
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 7.1e-85 318.5 388 45.9
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 7.9e-84 315.1 344 48.8
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 8.7e-83 311.6 424 42.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 8.7e-83 311.6 356 56.2
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-82 310.8 424 42.7
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.3e-82 309.3 333 51.7
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.0e-78 298.1 385 44.2
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 5.0e-78 295.8 328 48.2
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.1e-77 294.7 336 49.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.3e-75 287.7 332 50.0
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.3e-75 287.7 332 50.3
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 6.7e-75 285.4 163 79.1
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.8e-73 280.0 306 48.7
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.4e-72 276.9 158 79.7
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 4.2e-69 266.2 279 60.9
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.7e-54 217.6 136 74.3
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-52 211.5 289 47.4
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 3.3e-50 203.4 285 52.3
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 7.7e-47 192.2 302 50.0
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 4.2e-45 186.4 128 69.5
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.2e-44 184.9 113 72.6
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 8.0e-44 182.2 106 77.4
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 5.7e-42 176.0 319 37.6
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.3e-38 164.9 271 39.5
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.0e-38 162.9 162 50.6
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 2.2e-33 147.5 103 67.0
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 2.7e-31 140.6 169 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 6.1e-28 129.4 259 32.0
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 8.6e-22 109.0 75 66.7
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 4.3e-21 106.7 124 44.4
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.3e-14 85.1 68 58.8
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 4.3e-13 80.1 95 46.3


User provided reference genes

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