Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G245 Amborella trichopoda HOM05D003284 ORTHO05D038339 4.4e-80 301.2 150 100.0
ATR0214G001 Amborella trichopoda HOM05D003284 ORTHO05D038339 2.6e-56 222.2 139 84.9
ATR0582G146 Amborella trichopoda HOM05D003284 ORTHO05D004050 4.3e-35 151.8 157 57.3
Aqoxy1G02774 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 8.7e-28 127.5 156 48.1
Nn4g22120 Nelumbo nucifera HOM05D003284 ORTHO05D004050 1.1e-27 127.1 155 47.1
Cc11_g14940 Coffea canephora HOM05D003284 ORTHO05D004050 2.5e-27 125.9 152 47.4
Potri.003G161700 Populus trichocarpa HOM05D003284 ORTHO05D004050 3.3e-27 125.6 151 47.7
TAR622G1016 Trochodendron aralioides HOM05D003284 ORTHO05D004050 4.3e-27 125.2 157 46.5
Hma1.2p1_1494F.1_g286940 Hydrangea macrophylla HOM05D003284 ORTHO05D004050 5.6e-27 124.8 151 47.7
MBI07_g13941_MAGBIO Magnolia biondii HOM05D003284 ORTHO05D004050 5.6e-27 124.8 154 48.1
TWI36G0431 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 7.4e-27 124.4 151 47.7
SalBow6G5419 Salvia bowleyana HOM05D003284 ORTHO05D004050 1.6e-26 123.2 151 47.0
vmacro01014 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 1.6e-26 123.2 151 47.7
Lj9A124T28 Lonicera japonica HOM05D003284 ORTHO05D004050 2.1e-26 122.9 151 47.0
Lj9A128T46 Lonicera japonica HOM05D003284 ORTHO05D004050 2.1e-26 122.9 151 47.0
Potri.001G068400 Populus trichocarpa HOM05D003284 ORTHO05D004050 2.1e-26 122.9 151 46.4
Sabra03G0117500 Salix brachista HOM05D003284 ORTHO05D004050 2.1e-26 122.9 151 46.4
CiPaw.05G100500 Carya illinoinensis HOM05D003284 ORTHO05D004050 2.8e-26 122.5 151 48.3
CiPaw.06G110000 Carya illinoinensis HOM05D003284 ORTHO05D004050 2.8e-26 122.5 157 47.1
unitig_747.g21109 Utricularia gibba HOM05D003284 ORTHO05D004050 2.8e-26 122.5 149 47.7
Sabra01G0047600 Salix brachista HOM05D003284 ORTHO05D004050 3.7e-26 122.1 151 45.7
Nitab4.5_0000069g0530 Nicotiana tabacum HOM05D003284 ORTHO05D004050 4.8e-26 121.7 157 44.6
Haze_12510 Corylus avellana HOM05D003284 ORTHO05D004050 6.2e-26 121.3 151 46.4
TAR629G0534 Trochodendron aralioides HOM05D003284 ORTHO05D004050 6.2e-26 121.3 157 47.8
Atru.chr12.1435 Acer truncatum HOM05D003284 ORTHO05D004050 8.2e-26 120.9 151 45.7
Cpa.g.sc119.42 Carica papaya HOM05D003284 ORTHO05D004050 8.2e-26 120.9 151 47.0
SGA_v2.0_scaffold32G13262 Striga asiatica HOM05D003284 ORTHO05D004050 1.1e-25 120.6 157 44.6
ECA246G3528 Erigeron canadensis HOM05D003284 ORTHO05D004050 1.8e-25 119.8 151 47.0
TWI18G0756 Tripterygium wilfordii HOM05D003284 ORTHO05D004050 1.8e-25 119.8 151 46.4
Manes.09G188800 Manihot esculenta HOM05D003284 ORTHO05D004050 2.4e-25 119.4 151 45.7
Thecc.02G191200 Theobroma cacao HOM05D003284 ORTHO05D004050 2.4e-25 119.4 151 45.7
Manes.08G100400 Manihot esculenta HOM05D003284 ORTHO05D004050 3.1e-25 119.0 151 45.7
Atru.chr12.1336 Acer truncatum HOM05D003284 ORTHO05D004050 4.0e-25 118.6 151 45.0
CAN.G282.74 Capsicum annuum HOM05D003284 ORTHO05D004050 4.0e-25 118.6 157 43.9
COL.COLO4_37598 Corchorus olitorius HOM05D003284 ORTHO05D004050 4.0e-25 118.6 151 44.4
Oeu010259.1 Olea europaea HOM05D003284 ORTHO05D004050 4.0e-25 118.6 151 45.7
QL03p049017 Quercus lobata HOM05D003284 ORTHO05D004050 4.0e-25 118.6 151 45.7
MSTRG.448 Avicennia marina HOM05D003284 ORTHO05D004050 5.3e-25 118.2 152 44.1
Ciclev10004850m.g Citrus clementina HOM05D003284 ORTHO05D004050 5.3e-25 118.2 157 45.9
Solyc01g008110.4 Solanum lycopersicum HOM05D003284 ORTHO05D004050 5.3e-25 118.2 157 44.6
Sopen01g003660 Solanum pennellii HOM05D003284 ORTHO05D004050 5.3e-25 118.2 157 44.6
MSTRG.16881 Avicennia marina HOM05D003284 ORTHO05D004050 6.9e-25 117.9 149 46.3
Duzib052G0166 Durio zibethinus HOM05D003284 ORTHO05D004050 6.9e-25 117.9 151 43.7
Manes.16G051000 Manihot esculenta HOM05D003284 ORTHO05D004050 6.9e-25 117.9 151 45.0
Nitab4.5_0003304g0030 Nicotiana tabacum HOM05D003284 ORTHO05D004050 6.9e-25 117.9 157 43.3
PGSC0003DMG400016402 Solanum tuberosum HOM05D003284 ORTHO05D004050 6.9e-25 117.9 157 43.9
Gohir.D02G175800 Gossypium hirsutum HOM05D003284 ORTHO05D004050 9.0e-25 117.5 151 43.0
Gorai.005G197400 Gossypium raimondii HOM05D003284 ORTHO05D004050 9.0e-25 117.5 151 43.0
SEGI_35639 Sequoiadendron giganteum HOM05D003284 ORTHO05D004050 9.0e-25 117.5 149 47.7
MD13G1131600 Malus domestica HOM05D003284 ORTHO05D004050 1.2e-24 117.1 151 45.7
Rhsim12G0016800 Rhododendron simsii HOM05D003284 ORTHO05D004050 1.2e-24 117.1 150 46.0
GSVIVG01001101001 Vitis vinifera HOM05D003284 ORTHO05D004050 1.2e-24 117.1 151 46.4
CANSAT01G0892 Cannabis sativa HOM05D003284 ORTHO05D004050 1.5e-24 116.7 151 45.7
Ca_23129_v3 Cicer arietinum L. HOM05D003284 ORTHO05D004050 1.5e-24 116.7 151 46.4
Migut.K01047 Erythranthe guttata HOM05D003284 ORTHO05D004050 1.5e-24 116.7 152 45.4
Gohir.D12G144500 Gossypium hirsutum HOM05D003284 ORTHO05D004050 1.5e-24 116.7 151 43.0
Gorai.008G155900 Gossypium raimondii HOM05D003284 ORTHO05D004050 1.5e-24 116.7 151 43.0
Hund17844 Selenicereus undatus HOM05D003284 ORTHO05D004050 1.5e-24 116.7 158 44.3
VMungo0331G1423 Vigna mungo HOM05D003284 ORTHO05D004050 1.5e-24 116.7 152 43.4
Glyma.07G110900 Glycine max HOM05D003284 ORTHO05D004050 2.0e-24 116.3 152 44.7
Gohir.A03G153000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 2.6e-24 115.9 151 42.4
arahy.Tifrunner.gnm1.ann1.4A4I8X Arachis hypogaea HOM05D003284 ORTHO05D004050 3.4e-24 115.5 150 46.7
Cfa009457 Carpinus fangiana HOM05D003284 ORTHO05D004050 3.4e-24 115.5 146 46.6
Gohir.A12G140000 Gossypium hirsutum HOM05D003284 ORTHO05D004050 3.4e-24 115.5 151 43.0
MD16G1141900 Malus domestica HOM05D003284 ORTHO05D004050 3.4e-24 115.5 151 45.0
Prupe.1G214000 Prunus persica HOM05D003284 ORTHO05D004050 3.4e-24 115.5 151 45.7
Medtr8g006450 Medicago truncatula HOM05D003284 ORTHO05D004050 4.5e-24 115.2 151 45.0
Phvul.010G053100 Phaseolus vulgaris HOM05D003284 ORTHO05D004050 4.5e-24 115.2 152 43.4
Sed0004111 Sechium edule HOM05D003284 ORTHO05D004050 4.5e-24 115.2 151 46.4
Migut.B00119 Erythranthe guttata HOM05D003284 ORTHO05D004050 5.8e-24 114.8 131 48.9
ClCG07G011920 Citrullus lanatus HOM05D003284 ORTHO05D004050 7.6e-24 114.4 149 46.3
MELO3C017815.2 Cucumis melo HOM05D003284 ORTHO05D004050 7.6e-24 114.4 155 45.8
CsaV3_4G002240 Cucumis sativus L. HOM05D003284 ORTHO05D004050 7.6e-24 114.4 155 46.5
Glyma.03G115300 Glycine max HOM05D003284 ORTHO05D004050 7.6e-24 114.4 151 43.7
Oeu011727.1 Olea europaea HOM05D003284 ORTHO05D004050 7.6e-24 114.4 151 45.7
TPR.G24957 Trifolium pratense HOM05D003284 ORTHO05D004050 1.0e-23 114.0 151 45.0
HPP92_023029 Vanilla planifolia HOM05D003284 ORTHO05D004050 1.0e-23 114.0 158 46.2
Eucgr.B03563 Eucalyptus grandis HOM05D003284 ORTHO05D004050 1.3e-23 113.6 151 43.7
PGR102G1656 Punica granatum HOM05D003284 ORTHO05D004050 1.3e-23 113.6 151 45.0
Ah.11g043320 Amaranthus hybridus HOM05D003284 ORTHO05D004050 1.7e-23 113.2 158 43.0
CDE02G0640 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 1.7e-23 113.2 157 43.3
arahy.Tifrunner.gnm1.ann1.TJSZ1F Arachis hypogaea HOM05D003284 ORTHO05D004050 2.2e-23 112.8 157 44.6
arahy.Tifrunner.gnm1.ann1.VHEE5Y Arachis hypogaea HOM05D003284 ORTHO05D004050 2.2e-23 112.8 157 44.6
Duzib132G0279 Durio zibethinus HOM05D003284 ORTHO05D004050 2.2e-23 112.8 151 43.0
Sed0025427 Sechium edule HOM05D003284 ORTHO05D004050 2.2e-23 112.8 152 46.7
Lsat_1_v5_gn_3_32600 Lactuca sativa HOM05D003284 ORTHO05D004050 3.8e-23 112.1 152 43.4
Lj5C767T12 Lonicera japonica HOM05D003284 ORTHO05D004050 3.8e-23 112.1 144 44.4
PSO339G2157 Papaver somniferum HOM05D003284 ORTHO05D004050 3.8e-23 112.1 157 42.7
GSVIVG01027208001 Vitis vinifera HOM05D003284 ORTHO05D004050 6.5e-23 111.3 151 44.4
PSO384G4179 Papaver somniferum HOM05D003284 ORTHO05D004050 1.1e-22 110.5 156 42.3
vmacro01015 Vaccinium macrocarpon HOM05D003284 ORTHO05D004050 1.1e-22 110.5 151 44.4
EL10Ac1g00722 Beta vulgaris HOM05D003284 ORTHO05D004050 2.5e-22 109.4 158 42.4
Lalb_Chr21g0307761 Lupinus albus HOM05D003284 ORTHO05D004050 2.5e-22 109.4 151 46.4
CSS0003855 Camellia sinensis var. sinensis HOM05D003284 ORTHO05D004050 3.2e-22 109.0 159 44.0
AUR62023373 Chenopodium quinoa HOM05D003284 ORTHO05D004050 4.2e-22 108.6 153 42.5
Sc11g0000060 Simmondsia chinensis HOM05D003284 ORTHO05D004050 4.2e-22 108.6 151 44.4
THA.LOC104807262 Tarenaya hassleriana HOM05D003284 ORTHO05D004050 5.5e-22 108.2 150 42.7
AUR62001384 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.6e-21 106.7 158 40.5
AUR62013783 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.6e-21 106.7 153 42.5
Lj3g0023959 Lotus japonicus HOM05D003284 ORTHO05D004050 1.6e-21 106.7 157 42.0
RcHm_v2.0_Chr4g0428771 Rosa chinensis HOM05D003284 ORTHO05D004050 2.1e-21 106.3 153 43.1
SHI04109 Sapria himalayana HOM05D003284 ORTHO05D004050 2.1e-21 106.3 157 40.8
Aqoxy1G03842 Aquilegia oxysepala HOM05D003284 ORTHO05D004050 2.7e-21 105.9 155 39.4
AUR62025596 Chenopodium quinoa HOM05D003284 ORTHO05D004050 4.6e-21 105.1 158 39.9
Carub.0001s1132 Capsella rubella HOM05D003284 ORTHO05D004050 6.0e-21 104.8 153 42.5
AT1G11680 Arabidopsis thaliana HOM05D003284 ORTHO05D004050 7.9e-21 104.4 153 42.5
FvH4_4g22540 Fragaria vesca HOM05D003284 ORTHO05D004050 1.0e-20 104.0 138 46.4
FAN12G2070 Fragaria x ananassa HOM05D003284 ORTHO05D004050 1.0e-20 104.0 138 46.4
FAN17G2758 Fragaria x ananassa HOM05D003284 ORTHO05D004050 1.0e-20 104.0 138 46.4
AL1G22820 Arabidopsis lyrata HOM05D003284 ORTHO05D004050 3.0e-20 102.4 153 41.8
Peaxi162Scf00097g00139 Petunia axillaris HOM05D003284 ORTHO05D004050 3.0e-20 102.4 140 42.1
Sp1g10290 Schrenkiella parvula HOM05D003284 ORTHO05D004050 3.9e-20 102.1 153 42.5
Zm00001eb163800 Zea mays HOM05D003284 ORTHO05D004050 3.9e-20 102.1 154 39.6
Thhalv10007480m.g Eutrema salsugineum HOM05D003284 ORTHO05D004050 5.1e-20 101.7 157 42.0
FAN07G1836 Fragaria x ananassa HOM05D003284 ORTHO05D004050 5.1e-20 101.7 153 42.5
CARHR011990 Cardamine hirsuta HOM05D003284 ORTHO05D004050 6.7e-20 101.3 154 40.9
BraA08t35249Z Brassica rapa HOM05D003284 ORTHO05D004050 8.7e-20 100.9 148 44.6
Aa31LG1G3080 Aethionema arabicum HOM05D003284 ORTHO05D004050 1.1e-19 100.5 153 39.9
BcaC07g38681 Brassica carinata HOM05D003284 ORTHO05D004050 1.1e-19 100.5 146 43.8
BolC8t49116H Brassica oleracea HOM05D003284 ORTHO05D004050 1.1e-19 100.5 146 43.8
Lalb_Chr13g0290431 Lupinus albus HOM05D003284 ORTHO05D004050 1.1e-19 100.5 126 44.4
Dinv12599 Davidia involucrata HOM05D003284 ORTHO05D004050 2.5e-19 99.4 72 68.1
BcaNung04809 Brassica carinata HOM05D003284 ORTHO05D004050 3.3e-19 99.0 157 40.8
BolC5t29720H Brassica oleracea HOM05D003284 ORTHO05D004050 4.3e-19 98.6 151 40.4
Actinidia22112 Actinidia chinensis HOM05D003284 ORTHO05D004050 7.4e-19 97.8 72 68.1
SMO196G0249 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 7.4e-19 97.8 126 44.4
HanXRQChr17g0540371 Helianthus annuus HOM05D003284 ORTHO05D004050 9.7e-19 97.4 72 68.1
Zm00001eb405760 Zea mays HOM05D003284 ORTHO05D004050 1.3e-18 97.1 123 43.1
Os11g0525200 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.2e-18 96.3 124 42.7
C01p51050 Brassica napus HOM05D003284 ORTHO05D004050 3.7e-18 95.5 151 39.7
C05p09790 Brassica napus HOM05D003284 ORTHO05D004050 3.7e-18 95.5 149 39.6
unitig_22.g6374 Utricularia gibba HOM05D003284 ORTHO05D004050 3.7e-18 95.5 72 65.3
BcaC05g25034 Brassica carinata HOM05D003284 ORTHO05D004050 4.8e-18 95.1 151 39.1
BcaB03g13240 Brassica carinata HOM05D003284 ORTHO05D004050 8.2e-18 94.4 72 65.3
BolC1t05067H Brassica oleracea HOM05D003284 ORTHO05D004050 8.2e-18 94.4 149 39.6
BolC1t05086H Brassica oleracea HOM05D003284 ORTHO05D004050 8.2e-18 94.4 149 39.6
BcaC09g48332 Brassica carinata HOM05D003284 ORTHO05D004050 1.1e-17 94.0 149 40.3
A01p40010 Brassica napus HOM05D003284 ORTHO05D004050 1.1e-17 94.0 154 38.3
A08p33320 Brassica napus HOM05D003284 ORTHO05D004050 1.1e-17 94.0 70 67.1
C01p51290 Brassica napus HOM05D003284 ORTHO05D004050 1.1e-17 94.0 149 40.3
BraA01t04042Z Brassica rapa HOM05D003284 ORTHO05D004050 1.1e-17 94.0 154 38.3
BcaC05g25036 Brassica carinata HOM05D003284 ORTHO05D004050 3.1e-17 92.4 70 65.7
C08p14820 Brassica napus HOM05D003284 ORTHO05D004050 4.1e-17 92.0 70 65.7
A06p08230 Brassica napus HOM05D003284 ORTHO05D004050 6.9e-17 91.3 72 62.5
Rhsim12G0016600 Rhododendron simsii HOM05D003284 ORTHO05D004050 6.9e-17 91.3 158 38.0
Sc08g0001820 Simmondsia chinensis HOM05D001551 ORTHO05D003058 2.0e-16 89.7 73 58.9
AUR62044644 Chenopodium quinoa HOM05D003284 ORTHO05D004050 2.6e-16 89.4 72 59.7
Pp3c8_15480 Physcomitrium patens HOM05D003284 ORTHO05D004050 2.6e-16 89.4 137 38.7
BcaC09g48318 Brassica carinata HOM05D003284 ORTHO05D004050 5.9e-16 88.2 72 58.3
C01p51460 Brassica napus HOM05D003284 ORTHO05D004050 5.9e-16 88.2 72 58.3
CDE05G1673 Ceratophyllum demersum HOM05D003284 ORTHO05D004050 5.9e-16 88.2 72 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1116 Anthoceros agrestis HOM05D003284 ORTHO05D004050 1.7e-15 86.7 142 36.6
CARHR100170 Cardamine hirsuta HOM05D003284 ORTHO05D004050 5.0e-15 85.1 155 36.8
BcaC09g48322 Brassica carinata HOM05D003284 ORTHO05D004050 1.4e-14 83.6 70 57.1
AUR62035811 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.9e-14 83.2 128 39.8
AUR62035813 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.9e-14 83.2 128 39.8
Zm00001eb170560 Zea mays HOM05D003284 ORTHO05D004050 6.1e-13 78.2 127 37.8
Mapoly0003s0192 Marchantia polymorpha HOM05D003284 ORTHO05D004050 7.9e-13 77.8 138 34.8
AUR62035816 Chenopodium quinoa HOM05D003284 ORTHO05D004050 1.4e-12 77.0 69 56.5
Os05g0211100 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 1.8e-12 76.6 72 50.0
BraA06t24023Z Brassica rapa HOM05D003284 ORTHO05D004050 3.0e-12 75.9 56 64.3
EL10Ac3g06202 Beta vulgaris HOM05D003284 ORTHO05D004050 8.8e-12 74.3 134 38.1
EL10Ac3g06206 Beta vulgaris HOM05D003284 ORTHO05D004050 8.8e-12 74.3 145 34.5
AUR62027540 Chenopodium quinoa HOM05D003284 ORTHO05D004050 8.8e-12 74.3 69 53.6
Zm00001eb170580 Zea mays HOM05D003284 ORTHO05D004050 1.5e-11 73.6 151 34.4
DCAR_022749 Daucus carota HOM05D003284 ORTHO05D004050 3.3e-11 72.4 54 63.0
MCO02G285 Micromonas commoda HOM05D003284 ORTHO05D004050 1.3e-10 70.5 72 48.6
PRCOL_00005544 Prasinoderma coloniale HOM05D003284 ORTHO05D004050 1.3e-10 70.5 70 50.0
EL10Ac3g06208 Beta vulgaris HOM05D003284 ORTHO05D004050 1.7e-10 70.1 127 37.0
EL10Ac3g06204 Beta vulgaris HOM05D003284 ORTHO05D088368 3.7e-10 68.9 67 50.7
MD00G1206300 Malus domestica HOM05D003284 ORTHO05D004050 3.7e-10 68.9 105 40.0
C01p51430 Brassica napus HOM05D003284 ORTHO05D004050 4.8e-10 68.6 150 32.7
CBR_g12707 Chara braunii HOM05D003284 ORTHO05D004050 6.3e-10 68.2 72 48.6
SMO196G0269 Selaginella moellendorffii HOM05D003284 ORTHO05D004050 1.8e-09 66.6 50 64.0
MD07G1091900 Malus domestica HOM05D003284 ORTHO05D004050 5.3e-09 65.1 99 39.4
Cre02.g092350 Chlamydomonas reinhardtii HOM05D003284 ORTHO05D004050 1.2e-08 63.9 72 44.4
Psat4g225960 Pisum sativum HOM05D003284 ORTHO05D004050 1.5e-08 63.5 125 36.8
Os02g0113200 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 4.5e-08 62.0 82 37.8
Os05g0415800 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 2.9e-07 59.3 119 33.6
Zm00001eb159000 Zea mays HOM05D003284 ORTHO05D050158 2.9e-07 59.3 130 30.8
Os05g0415900 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D293225 3.8e-07 58.9 72 38.9
Os05g0416400 Oryza sativa ssp. japonica HOM05D003284 ORTHO05D004050 3.8e-07 58.9 72 37.5
SEGI_16891 Sequoiadendron giganteum HOM05D003284 ORTHO05D384666 3.2e-06 55.8 116 38.8


User provided reference genes

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