Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 4.9e-228 794.3 440 100.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 8.3e-119 431.4 446 56.5
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.7e-117 426.4 458 55.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.7e-117 426.4 414 56.0
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.9e-117 425.2 451 57.0
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.1e-115 421.0 457 55.1
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.1e-115 421.0 454 55.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.5e-115 420.6 418 57.2
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.9e-115 420.2 453 54.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.0e-113 414.5 458 55.0
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.0e-113 414.5 452 53.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.0e-113 412.9 468 54.3
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 4.0e-113 412.5 417 54.7
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 6.8e-113 411.8 417 54.0
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.2e-112 411.0 458 53.5
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.6e-112 409.8 413 54.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.7e-112 408.7 458 53.3
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.8e-111 406.4 462 53.5
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.9e-111 405.6 460 52.2
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 6.3e-111 405.2 419 55.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.3e-111 405.2 421 52.7
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 8.3e-111 404.8 417 54.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.1e-110 404.4 460 53.3
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.1e-110 404.4 457 52.3
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.4e-110 403.3 417 55.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.4e-110 403.3 458 52.4
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 3.2e-110 402.9 460 52.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 3.2e-110 402.9 410 54.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 4.1e-110 402.5 415 53.3
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.4e-110 402.1 415 53.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.4e-110 402.1 417 55.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.0e-109 400.2 459 51.6
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.0e-109 400.2 413 54.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.0e-109 400.2 416 54.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.7e-109 399.8 456 52.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.7e-109 399.8 413 54.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.5e-109 399.4 416 53.8
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.5e-109 399.1 426 54.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.5e-109 399.1 413 55.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 5.9e-109 398.7 412 55.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.9e-109 398.7 412 55.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-108 397.5 460 53.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.3e-108 396.7 426 52.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.9e-108 396.4 412 55.3
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.9e-108 396.0 410 53.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 3.9e-108 396.0 418 53.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 8.6e-108 394.8 430 51.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 8.6e-108 394.8 459 53.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.5e-107 394.0 452 50.9
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.5e-107 394.0 417 54.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.5e-107 394.0 426 52.3
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.9e-107 393.7 418 52.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 4.3e-107 392.5 457 52.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 9.5e-107 391.3 456 51.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 9.5e-107 391.3 458 52.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.5e-107 391.3 408 52.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.6e-106 390.6 437 52.9
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.6e-106 390.6 411 53.5
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.8e-106 389.8 426 52.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 3.6e-106 389.4 434 51.4
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.6e-106 389.4 428 54.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.6e-106 389.4 433 50.8
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 4.7e-106 389.0 430 50.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 8.0e-106 388.3 437 51.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.0e-106 388.3 412 53.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.3e-105 386.7 418 53.3
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.3e-105 386.7 412 52.2
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.3e-105 386.7 413 53.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.3e-105 386.7 411 51.6
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.3e-105 386.7 423 51.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 3.1e-105 386.3 411 52.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.0e-105 386.0 413 52.5
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.0e-105 386.0 425 51.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 4.0e-105 386.0 455 51.6
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 4.0e-105 386.0 425 52.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 5.2e-105 385.6 411 52.1
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 5.2e-105 385.6 455 50.3
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.8e-105 385.2 420 51.9
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.8e-105 385.2 425 51.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 8.9e-105 384.8 465 49.2
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.5e-104 384.0 465 49.9
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.0e-104 383.6 412 50.7
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 3.4e-104 382.9 461 51.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-104 382.5 410 52.2
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.7e-103 380.6 451 51.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.9e-103 379.0 449 51.0
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 4.9e-103 379.0 410 52.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 8.3e-103 378.3 463 49.5
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.4e-102 377.5 406 52.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.0e-102 375.2 415 50.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.0e-101 373.6 410 52.4
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 3.5e-101 372.9 412 51.5
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.6e-101 372.5 411 51.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 6.0e-101 372.1 451 50.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 7.8e-101 371.7 451 50.6
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 7.8e-101 371.7 451 50.6
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.8e-101 371.7 462 49.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.6e-100 368.6 460 50.4
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.6e-100 368.2 452 49.6
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.9e-99 367.1 464 48.5
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.3e-99 365.9 409 51.6
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.3e-99 365.9 430 50.2
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 5.6e-99 365.5 409 51.6
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.5e-99 364.8 456 49.1
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-98 364.4 390 52.3
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.6e-98 362.8 458 48.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.6e-98 362.8 410 51.2
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.6e-98 362.8 409 49.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.4e-97 360.9 442 51.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.4e-97 360.9 412 51.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.3e-97 360.1 408 51.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 4.0e-97 359.4 412 50.5
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 5.2e-97 359.0 460 49.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.2e-94 349.7 454 48.2
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.7e-93 346.7 454 48.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.3e-87 327.8 425 46.4
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.2e-87 327.0 336 52.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.3e-87 325.1 456 42.8
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-86 324.7 456 43.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.2e-85 321.2 456 43.4
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.1e-82 310.5 333 52.0
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-77 294.7 340 48.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.1e-73 280.0 415 40.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-69 266.9 331 49.5
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.6e-61 241.1 259 52.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.5e-59 233.8 445 37.8
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.0e-55 221.9 268 47.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.1e-49 201.8 156 60.3
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.8e-48 196.1 251 47.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.4e-46 191.4 169 59.2
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.3e-44 184.1 144 68.1
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-43 181.8 199 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.5e-43 181.4 333 35.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.3e-43 180.3 433 33.7
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.3e-41 172.9 232 47.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 5.9e-40 169.5 161 59.0
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.3e-36 157.5 158 56.3
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.5e-15 86.3 94 52.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 5.5e-14 83.2 113 46.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.0e-11 74.7 160 31.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.7e-08 62.8 72 47.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 3.2e-06 57.4 139 34.5


User provided reference genes

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