Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 0.0e+00 1234.2 594 100.0
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 4.9e-183 645.2 604 54.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 6.5e-167 591.7 603 51.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.2e-160 570.9 564 53.2
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.7e-159 567.0 549 53.2
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.1e-158 564.3 560 53.4
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.9e-158 563.5 589 52.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.8e-156 557.0 594 51.3
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.1e-155 554.3 556 51.6
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-155 553.5 575 50.3
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.9e-155 553.5 560 51.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.5e-155 553.1 597 49.9
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 3.3e-155 552.7 561 51.9
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 3.3e-155 552.7 575 50.3
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-155 552.7 575 50.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-155 552.7 575 50.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.3e-155 552.7 561 51.9
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.3e-155 552.4 598 50.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.4e-155 551.6 575 50.3
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 9.7e-155 551.2 562 52.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.3e-154 550.8 561 51.5
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-154 550.4 575 50.1
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.8e-154 549.7 559 52.4
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-154 549.3 575 50.3
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.7e-154 549.3 595 49.7
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.8e-154 548.9 564 51.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.2e-154 548.1 564 51.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 8.2e-154 548.1 602 49.2
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.5e-152 543.9 565 50.6
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 3.4e-152 542.7 566 51.9
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.9e-152 542.0 560 51.2
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.0e-151 541.2 598 49.8
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.0e-151 541.2 534 52.6
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.0e-151 541.2 553 52.4
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.3e-151 540.8 590 51.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.7e-151 540.4 598 49.8
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.9e-151 539.7 549 51.7
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 3.8e-151 539.3 561 50.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 8.5e-151 538.1 558 51.1
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.1e-150 537.7 602 49.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.1e-150 537.7 594 49.7
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 2.5e-150 536.6 549 51.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.5e-150 536.6 548 52.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.2e-150 536.2 562 50.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.2e-150 536.2 563 51.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 4.2e-150 535.8 595 48.9
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.2e-149 534.3 595 49.4
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.6e-149 533.9 562 50.2
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.1e-149 533.5 577 49.2
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.7e-149 533.1 549 50.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.7e-149 533.1 599 48.1
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.7e-149 533.1 560 50.4
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.1e-149 531.9 549 50.1
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 7.9e-149 531.6 596 49.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.0e-147 526.9 564 49.6
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 3.3e-147 526.2 549 50.3
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 5.7e-147 525.4 602 48.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.1e-145 519.2 563 50.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 6.9e-145 518.5 569 48.3
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 6.9e-145 518.5 608 47.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-144 516.9 604 48.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.0e-144 516.9 570 48.4
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 4.5e-144 515.8 559 50.3
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.0e-143 514.6 559 50.1
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.0e-143 514.6 540 50.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.3e-143 514.2 563 48.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.9e-143 513.1 563 47.8
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-143 512.7 562 49.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 3.8e-143 512.7 562 49.8
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 3.8e-143 512.7 562 49.8
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 5.0e-143 512.3 568 49.6
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 6.5e-143 511.9 603 46.8
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.5e-143 511.9 572 48.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.5e-143 511.9 572 48.1
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.4e-142 510.8 589 46.5
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.9e-142 510.4 554 50.7
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.5e-142 510.0 573 48.7
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.5e-142 510.0 572 47.7
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 5.5e-142 508.8 568 49.3
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.2e-142 508.4 506 53.4
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.4e-142 508.1 552 49.5
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.6e-141 506.1 535 50.5
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.6e-141 506.1 555 49.0
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 6.1e-141 505.4 572 47.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.4e-140 504.2 601 48.1
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.4e-140 504.2 571 47.5
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.4e-140 504.2 605 47.4
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 5.2e-140 502.3 584 47.9
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.1e-139 501.1 596 47.8
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 4.4e-139 499.2 566 47.7
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 5.7e-139 498.8 609 47.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.7e-139 498.0 572 48.1
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 4.8e-138 495.7 582 46.9
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.8e-137 493.8 572 46.5
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 9.1e-137 491.5 582 47.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.2e-136 491.1 551 49.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-136 491.1 557 49.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.2e-136 491.1 557 49.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.2e-136 491.1 557 49.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.6e-136 490.7 548 48.4
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.6e-136 490.7 551 47.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.6e-136 490.7 551 47.7
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 3.5e-136 489.6 548 49.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 4.5e-136 489.2 551 47.4
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.0e-135 488.0 576 45.7
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.0e-135 488.0 551 47.5
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 5.0e-135 485.7 560 48.2
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 8.5e-135 485.0 542 48.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.9e-134 483.8 565 46.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.7e-133 479.9 590 45.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 4.7e-133 479.2 506 50.8
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 4.0e-132 476.1 580 47.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 1.5e-131 474.2 567 46.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.7e-130 469.5 524 49.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.2e-130 468.4 567 45.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.4e-129 466.8 569 46.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 3.5e-128 463.0 382 56.5
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 6.5e-127 458.8 454 52.9
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.5e-126 456.8 608 44.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-125 454.5 526 47.5
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.7e-125 453.4 381 55.9
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 5.4e-121 439.1 557 44.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 5.4e-121 439.1 310 67.4
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 5.0e-119 432.6 560 44.6
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 8.6e-119 431.8 597 42.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 9.5e-118 428.3 600 41.7
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 4.4e-115 419.5 403 53.3
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 9.2e-113 411.8 553 43.0
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.5e-107 394.4 575 41.6
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.4e-98 362.5 440 48.4
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.6e-61 241.5 350 41.1
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 9.3e-49 199.1 289 42.2
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-48 197.6 293 43.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.5e-48 197.2 201 47.8
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.9e-41 174.9 297 38.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 5.9e-35 153.3 150 51.3
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 4.4e-30 137.1 431 26.7
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 4.8e-21 107.1 76 64.5
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-19 102.4 101 51.5
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 9.4e-17 92.8 121 42.1
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 1.2e-14 85.9 230 24.3
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 4.4e-14 84.0 92 52.2
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 8.0e-08 63.2 102 38.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 3.0e-07 61.2 224 25.0


User provided reference genes

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