Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.4e-93 345.5 177 100.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-52 209.9 282 48.6
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-48 196.1 282 45.4
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-48 196.1 282 45.4
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 4.0e-48 195.3 282 45.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 2.0e-47 193.0 282 44.7
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.9e-46 189.1 282 43.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.9e-46 188.3 282 44.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 6.4e-46 188.0 282 43.3
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 6.4e-46 188.0 282 44.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.4e-45 186.0 278 44.2
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 4.2e-45 185.3 285 42.8
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 2.7e-44 182.6 282 42.6
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.7e-44 182.6 282 44.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.5e-44 182.2 282 44.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 3.5e-44 182.2 282 44.3
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 6.0e-44 181.4 282 42.9
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 6.0e-44 181.4 282 42.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.0e-43 180.6 282 43.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.3e-43 180.3 282 43.3
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.3e-43 180.3 274 43.4
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.7e-43 179.9 282 42.6
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.3e-43 179.5 282 42.2
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.3e-43 179.5 282 42.6
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.0e-43 179.1 287 42.5
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.0e-43 179.1 281 42.7
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 3.9e-43 178.7 279 42.7
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.1e-43 178.3 288 42.4
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 5.1e-43 178.3 282 42.6
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.6e-43 177.9 282 42.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 6.6e-43 177.9 282 42.6
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.7e-43 177.6 282 41.8
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.5e-42 176.8 282 42.6
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.5e-42 176.8 282 43.6
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.9e-42 176.4 282 42.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-42 176.4 282 42.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-42 176.4 282 42.2
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.5e-42 176.0 282 42.2
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.3e-42 175.6 282 41.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 5.6e-42 174.9 282 41.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 5.6e-42 174.9 282 41.8
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 5.6e-42 174.9 282 42.6
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 9.6e-42 174.1 282 41.5
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.6e-41 173.3 282 41.8
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.6e-41 173.3 282 41.5
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.1e-41 172.9 282 41.8
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.1e-41 172.9 282 41.5
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.1e-41 172.9 281 42.0
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.1e-41 172.9 282 42.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.8e-41 172.6 283 41.3
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.8e-41 172.6 282 41.8
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.8e-41 172.6 279 41.9
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 42.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 42.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 42.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 42.2
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 41.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 41.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 3.6e-41 172.2 282 42.6
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.8e-41 171.8 282 41.5
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.2e-41 171.4 233 49.4
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 6.2e-41 171.4 282 40.8
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 6.2e-41 171.4 282 41.1
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 6.2e-41 171.4 282 40.4
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 8.1e-41 171.0 282 41.5
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.1e-41 171.0 282 40.8
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.1e-40 170.6 282 41.5
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.8e-40 169.9 282 40.4
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 1.8e-40 169.9 282 41.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.8e-40 169.9 282 40.8
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.8e-40 169.9 282 40.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.8e-40 169.9 283 41.3
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 2.4e-40 169.5 282 40.4
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.4e-40 169.5 282 41.1
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.4e-40 169.5 282 40.8
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.1
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 3.1e-40 169.1 282 40.8
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 4.0e-40 168.7 278 41.4
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 6.9e-40 167.9 282 41.5
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 6.9e-40 167.9 296 39.9
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 9.0e-40 167.5 283 39.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 9.0e-40 167.5 283 39.6
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 9.0e-40 167.5 283 39.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 9.0e-40 167.5 283 39.6
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 9.0e-40 167.5 282 40.8
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.2e-39 167.2 282 39.7
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.2e-39 167.2 282 40.8
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 1.2e-39 167.2 282 40.4
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.2e-39 167.2 282 40.8
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-39 166.8 283 39.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.5e-39 166.8 283 39.6
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.0e-39 166.4 314 37.9
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.6e-39 166.0 283 39.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.6e-39 166.0 283 39.6
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.6e-39 166.0 296 38.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.4e-39 165.6 282 39.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 4.4e-39 165.2 317 37.5
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 4.4e-39 165.2 277 41.5
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 5.8e-39 164.9 279 40.5
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 7.6e-39 164.5 278 40.6
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.7e-38 163.3 282 40.4
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.9e-38 162.5 278 41.4
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.9e-38 162.5 277 41.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.9e-38 162.5 282 39.7
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.8e-38 162.2 277 41.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.8e-38 162.2 277 41.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.4e-38 161.0 278 40.3
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.4e-38 161.0 278 40.3
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.4e-38 161.0 278 40.3
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.2e-37 159.1 286 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.4e-37 158.3 282 40.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.4e-37 158.3 283 40.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 9.3e-37 157.5 282 39.4
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.7e-36 156.0 278 40.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 4.6e-36 155.2 335 35.2
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.1e-34 150.6 272 39.3
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 3.4e-31 139.0 211 44.1
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.8e-31 138.3 278 36.3
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 2.9e-30 136.0 216 42.6
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.3e-29 131.0 222 41.0
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.6e-28 128.6 258 38.0
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 7.9e-28 127.9 122 61.5
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 5.1e-27 125.2 276 34.8
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.1e-26 124.0 276 34.8
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.5e-26 123.6 268 37.3
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 7.4e-26 121.3 270 35.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 8.1e-25 117.9 134 51.5
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 4.0e-24 115.5 112 64.3
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 5.3e-24 115.2 221 38.0
ATR1081G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 8.4e-22 107.8 60 85.0
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 8.4e-22 107.8 290 30.3
ATR1098G084 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-20 103.6 60 81.7
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.9e-19 99.0 113 55.8
Lsat_1_v5_gn_5_24520 Lactuca sativa HOM05D002352 ORTHO05D003724 8.7e-19 97.8 60 73.3
SHI23484 Sapria himalayana HOM05D002352 ORTHO05D013021 8.7e-19 97.8 116 52.6
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 9.6e-18 94.4 108 48.1
Oeu043710.2 Olea europaea HOM05D002352 ORTHO05D003724 1.6e-17 93.6 60 70.0
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.1e-17 93.2 112 50.9
Lsat_1_v5_gn_8_115100 Lactuca sativa HOM05D002352 ORTHO05D003724 3.7e-17 92.4 59 69.5
MBI13_g10046_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.2e-17 91.3 73 63.0
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 8.2e-17 91.3 138 42.0
Hma1.2p1_0617F.1_g190130 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 9.0e-16 87.8 57 73.7
ATR0589G098 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.9e-14 82.8 60 70.0
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 3.8e-14 82.4 111 41.4
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.4e-13 80.5 105 44.8
ATR0589G051 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-12 77.0 71 66.2
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 2.3e-11 73.2 74 59.5
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 3.9e-11 72.4 136 36.8
CiPaw.01G104500 Carya illinoinensis HOM05D002352 ORTHO05D013021 3.7e-09 65.9 80 46.2
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.4e-08 63.9 40 70.0
Pp3c7_1820 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.8e-08 63.5 53 69.8
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 2.4e-08 63.2 122 37.7
Lsat_1_v5_gn_5_31501 Lactuca sativa HOM05D002352 ORTHO05D013021 4.1e-08 62.4 44 61.4
TPR.G36198 Trifolium pratense HOM05D002352 ORTHO05D003724 9.0e-08 61.2 44 72.7
EL10Ac1g02150 Beta vulgaris HOM05D002352 ORTHO05D013021 2.0e-07 60.1 49 55.1
MBI09_g39825_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D013021 2.2e-06 56.6 42 61.9
MBI18_g25791_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D013021 2.2e-06 56.6 45 60.0
MBI18_g33165_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D013021 3.8e-06 55.8 48 56.2
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 8.5e-06 54.7 129 32.6


User provided reference genes

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