Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.9e-170 602.4 311 100.0
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.6e-100 370.2 248 71.4
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.5e-98 363.6 270 68.1
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.4e-96 356.3 285 63.9
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 5.3e-96 355.1 248 68.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.3e-94 350.5 259 65.6
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.7e-94 350.1 281 61.9
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.9e-94 349.4 279 63.4
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.9e-94 349.4 251 68.1
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.9e-94 349.4 286 60.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 3.8e-94 349.0 285 62.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 3.8e-94 349.0 255 66.7
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 6.5e-94 348.2 251 67.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 6.5e-94 348.2 244 69.3
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 8.5e-94 347.8 244 69.3
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.1e-93 347.4 240 68.8
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.5e-93 347.1 240 68.3
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.9e-93 346.7 286 61.9
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.9e-93 346.7 284 62.7
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.5e-93 346.3 241 68.5
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 3.2e-93 345.9 248 67.7
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 3.2e-93 345.9 240 69.2
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 4.2e-93 345.5 283 61.8
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 7.2e-93 344.7 247 66.4
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.2e-92 344.0 250 66.0
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.6e-92 343.6 240 68.3
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 2.1e-92 343.2 259 64.5
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.1e-92 343.2 272 61.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.7e-92 342.8 222 71.2
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 4.7e-92 342.0 243 67.9
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 8.0e-92 341.3 276 63.8
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.0e-91 340.9 242 66.9
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.4e-91 340.5 277 61.4
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.8e-91 340.1 242 66.9
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.2e-91 338.6 245 66.1
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.8e-91 337.8 238 68.1
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.0e-90 336.7 243 66.3
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.6e-90 336.3 251 65.3
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 3.3e-90 335.9 243 67.9
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 7.4e-90 334.7 244 65.6
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.3e-89 334.0 285 59.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.7e-89 332.4 245 66.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 4.8e-89 332.0 233 66.5
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-88 330.9 288 59.7
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.1e-88 330.9 245 64.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.4e-88 330.5 285 59.3
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.4e-88 330.5 308 57.5
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.8e-88 330.1 246 63.4
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.8e-88 330.1 263 62.0
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.8e-88 330.1 308 57.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.4e-88 329.7 242 64.9
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 3.1e-88 329.3 263 62.0
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 3.1e-88 329.3 240 65.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 4.1e-88 328.9 224 68.8
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 7.0e-88 328.2 244 64.3
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 9.1e-88 327.8 264 62.1
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.0e-87 326.6 241 66.8
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.6e-87 326.2 225 68.9
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.5e-87 325.9 238 65.5
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.5e-87 325.9 246 64.2
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 4.5e-87 325.5 259 61.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 5.9e-87 325.1 250 64.4
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 7.7e-87 324.7 284 58.8
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 7.7e-87 324.7 225 68.4
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 7.7e-87 324.7 246 63.0
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.0e-86 324.3 242 64.5
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.0e-86 324.3 252 60.3
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.0e-86 324.3 246 63.8
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.3e-86 323.9 246 64.6
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.7e-86 323.6 285 57.2
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.7e-86 323.6 230 68.3
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.9e-86 322.8 325 55.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 8.5e-86 321.2 309 56.0
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 8.5e-86 321.2 240 65.4
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 8.5e-86 321.2 266 60.9
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.1e-85 320.9 242 62.8
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.5e-85 320.5 248 62.9
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 2.5e-85 319.7 253 59.7
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 2.5e-85 319.7 291 56.7
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.5e-85 319.7 248 64.1
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 3.2e-85 319.3 247 61.5
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 3.2e-85 319.3 295 56.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 5.5e-85 318.5 244 63.9
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 5.5e-85 318.5 291 56.4
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 9.4e-85 317.8 241 65.6
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.4e-83 313.9 224 65.6
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.3e-83 313.2 292 57.9
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 4.0e-83 312.4 225 64.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 4.0e-83 312.4 244 62.7
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 2.0e-82 310.1 269 59.5
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 4.4e-82 308.9 280 55.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 8.3e-81 304.7 211 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 3.5e-79 299.3 261 58.2
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.3e-78 297.4 267 56.9
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.3e-78 297.4 242 58.3
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 7.2e-77 291.6 245 59.2
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.1e-76 290.0 276 56.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 5.7e-74 282.0 218 63.8
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.1e-72 277.7 232 62.1
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.1e-72 277.7 261 56.7
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 3.1e-72 276.2 203 68.0
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 7.0e-72 275.0 236 58.9
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.0e-70 268.9 278 50.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.4e-67 260.8 251 53.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 4.6e-63 245.7 179 67.0
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 7.8e-63 245.0 206 59.2
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.2e-60 237.7 243 51.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 9.8e-58 228.0 144 71.5
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.6e-47 194.1 216 48.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 3.5e-47 193.0 229 46.3
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.9e-40 170.6 148 56.1
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 7.1e-40 168.7 214 42.1
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.7e-30 137.5 110 60.9
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 9.6e-29 131.7 88 68.2
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 9.0e-27 125.2 136 50.0
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 8.7e-22 108.6 83 61.4
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 2.6e-18 97.1 68 64.7
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 8.4e-17 92.0 56 71.4
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.4e-16 91.3 111 47.7
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.2e-15 88.2 61 62.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.0e-14 85.1 63 61.9
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.8e-14 84.3 58 65.5
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 2.3e-14 84.0 136 37.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.8e-12 77.0 51 70.6
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.1e-11 75.1 49 67.3
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.4e-11 74.7 65 63.1
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.4e-11 74.7 170 32.4
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.8e-11 74.3 62 56.5
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.8e-11 74.3 49 69.4
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 4.5e-10 69.7 53 62.3
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 5.5e-08 62.8 103 35.9
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 1.6e-07 61.2 43 62.8


User provided reference genes

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