Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 0.0e+00 1536.5 773 100.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.1e-222 777.3 811 55.0
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.1e-203 714.1 711 55.3
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.2e-200 704.1 756 52.8
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.2e-186 657.5 786 48.7
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 3.4e-184 649.4 680 53.4
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 9.9e-184 647.9 652 53.8
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.2e-182 642.9 652 53.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 6.0e-181 638.6 729 51.7
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 7.8e-181 638.3 788 48.6
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.0e-180 637.9 785 47.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.5e-179 634.0 790 50.1
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 4.0e-177 625.9 790 49.7
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.0e-176 623.6 829 45.8
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.6e-176 623.2 794 46.7
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 2.6e-176 623.2 784 49.9
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.4e-176 622.5 796 46.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.8e-176 622.1 791 46.9
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 7.6e-176 621.7 697 50.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 9.9e-176 621.3 668 51.6
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.2e-175 620.2 733 49.5
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 3.8e-175 619.4 780 48.3
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.9e-174 617.1 641 53.4
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 7.1e-174 615.1 789 47.3
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.2e-173 614.4 800 47.0
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 7.8e-173 611.7 736 49.5
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.3e-172 610.9 784 46.8
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 8.7e-172 608.2 785 47.0
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.5e-171 607.4 820 45.4
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 3.3e-171 606.3 687 50.5
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 4.3e-171 605.9 793 47.4
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 9.6e-171 604.7 741 48.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.3e-170 604.4 663 50.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.3e-170 604.4 783 47.1
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 3.6e-170 602.8 785 46.9
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.6e-170 602.8 820 45.1
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 3.6e-170 602.8 781 47.1
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 1.8e-169 600.5 627 54.1
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 5.3e-169 599.0 784 46.0
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.5e-168 597.4 758 48.3
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 7.6e-168 595.1 782 46.0
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 7.6e-168 595.1 782 46.3
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 8.4e-167 591.7 783 46.4
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 8.4e-167 591.7 785 47.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.1e-166 591.3 623 51.8
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 3.2e-166 589.7 705 48.7
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 5.4e-166 589.0 775 46.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 7.1e-166 588.6 785 46.6
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.1e-165 587.0 794 45.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 2.7e-165 586.6 784 44.6
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 4.6e-165 585.9 627 52.2
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 2.3e-164 583.6 717 48.8
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 5.1e-164 582.4 789 45.8
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 8.7e-164 581.6 738 47.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.5e-163 580.9 702 50.1
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 3.3e-163 579.7 690 50.1
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 6.2e-162 575.5 782 46.4
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.8e-161 573.9 714 47.5
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 4.0e-161 572.8 641 50.2
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.3e-161 572.4 638 50.3
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 7.6e-160 568.5 677 48.9
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 6.4e-159 565.5 784 45.7
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 8.4e-159 565.1 790 45.8
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.3e-158 561.6 592 51.9
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 2.1e-157 560.5 799 45.6
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 6.0e-157 558.9 680 49.3
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 6.0e-157 558.9 781 45.7
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.0e-156 558.1 771 44.4
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 3.0e-156 556.6 796 45.5
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 6.7e-156 555.4 788 43.0
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 6.7e-156 555.4 796 45.4
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 8.7e-156 555.1 750 44.9
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 4.8e-154 549.3 761 43.5
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.4e-153 547.0 756 45.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.0e-153 546.2 797 42.9
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 5.3e-153 545.8 652 48.6
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.9e-153 545.4 759 45.5
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.2e-152 544.7 805 43.5
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.0e-151 541.6 754 44.3
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 4.2e-150 536.2 707 45.5
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 4.6e-149 532.7 795 42.5
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.3e-148 530.4 714 45.1
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.1e-147 528.1 686 44.2
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 5.7e-147 525.8 676 46.4
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 2.8e-146 523.5 793 42.5
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.8e-146 522.7 651 47.9
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 3.1e-145 520.0 796 42.6
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-144 517.7 495 53.5
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 4.5e-144 516.2 797 42.4
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.7e-143 514.2 789 42.5
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.3e-140 503.8 852 41.3
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.4e-134 484.6 847 40.1
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 4.7e-125 453.0 666 42.6
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.8e-121 441.0 441 54.9
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.6e-120 438.0 609 44.7
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.3e-119 434.9 531 47.6
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.4e-116 424.9 819 37.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 3.7e-114 416.8 752 39.6
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.7e-106 390.2 565 42.3
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-102 378.6 499 46.3
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 5.6e-94 349.7 611 38.6
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 4.3e-86 323.6 526 39.9
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 5.6e-86 323.2 613 35.9
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 5.1e-79 300.1 934 30.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.0e-71 275.8 744 32.9
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 7.3e-70 269.6 498 36.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.0e-55 222.6 331 42.9
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.7e-48 198.0 257 47.1
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 3.2e-41 174.5 773 27.0
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.2e-41 174.1 225 49.3
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 9.3e-41 172.9 480 31.2
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-38 166.0 331 38.4
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.5e-30 138.3 254 40.9
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 3.3e-30 137.9 216 41.2
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.1e-28 132.9 621 22.4
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.9e-24 116.7 134 45.5
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-23 115.9 168 45.2
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 3.3e-22 111.3 210 41.0
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 7.2e-17 93.6 140 44.3
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.1e-16 90.5 171 32.7
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 2.3e-15 88.6 94 43.6
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.7e-14 84.0 116 49.1
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.7e-13 82.4 118 44.9
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 7.0e-12 77.0 74 56.8
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 7.2e-09 67.0 99 42.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 7.2e-09 67.0 71 49.3
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 4.7e-08 64.3 101 43.6
unitig_578.g16702 Utricularia gibba HOM05D000463 ORTHO05D008669 1.8e-07 62.4 100 31.0
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 3.0e-07 61.6 63 41.3
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 3.0e-07 61.6 63 41.3
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 3.0e-07 61.6 63 41.3
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 5.2e-07 60.8 114 30.7
BcaB01g01944 Brassica carinata HOM05D000463 ORTHO05D001294 8.8e-07 60.1 63 39.7
BraA09t35921Z Brassica rapa HOM05D000463 ORTHO05D001294 8.8e-07 60.1 63 39.7
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 2.6e-06 58.5 60 40.0
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 5.7e-06 57.4 60 36.7
QL08p020973 Quercus lobata HOM05D000463 ORTHO05D001294 5.7e-06 57.4 60 40.0
Rhsim04G0020400 Rhododendron simsii HOM05D000463 ORTHO05D001294 5.7e-06 57.4 60 40.0
RhsimUnG0031800 Rhododendron simsii HOM05D000463 ORTHO05D001294 5.7e-06 57.4 60 40.0
VMungo1127G0725 Vigna mungo HOM05D000463 ORTHO05D001294 5.7e-06 57.4 90 32.2
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 7.5e-06 57.0 63 39.7
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 7.5e-06 57.0 63 39.7
Nitab4.5_0001551g0050 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.5e-06 57.0 67 38.8
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 7.5e-06 57.0 110 26.4
SGA_v2.0_scaffold34G13827 Striga asiatica HOM05D000463 ORTHO05D001294 7.5e-06 57.0 108 32.4
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 7.5e-06 57.0 60 43.3
Cc02_g13290 Coffea canephora HOM05D000463 ORTHO05D001294 9.7e-06 56.6 65 36.9
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 9.7e-06 56.6 77 29.9
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 9.7e-06 56.6 61 37.7
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 9.7e-06 56.6 61 37.7
Phvul.011G157800 Phaseolus vulgaris HOM05D000463 ORTHO05D001294 9.7e-06 56.6 91 33.0
Solyc10g008400.1 Solanum lycopersicum HOM05D000463 ORTHO05D001294 9.7e-06 56.6 61 39.3
Sopen10g004230 Solanum pennellii HOM05D000463 ORTHO05D001294 9.7e-06 56.6 61 39.3


User provided reference genes

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