Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.0e-305 1051.6 509 100.0
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 5.1e-205 718.0 483 70.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.6e-201 705.7 476 69.7
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.0e-197 693.7 491 67.6
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 2.8e-195 685.6 488 67.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 6.3e-195 684.5 482 67.6
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 4.1e-194 681.8 482 67.2
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.9e-194 681.0 503 64.8
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.4e-191 673.3 503 64.0
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.4e-191 673.3 503 64.2
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 4.2e-191 671.8 503 64.0
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.6e-190 669.8 525 62.7
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.6e-190 669.8 476 66.6
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 3.0e-189 665.6 492 63.6
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 5.1e-189 664.8 489 65.4
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.6e-188 662.5 493 64.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 4.4e-188 661.8 477 65.6
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 5.7e-188 661.4 507 63.3
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.7e-187 659.8 473 66.2
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.1e-186 657.1 481 64.9
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.1e-186 657.1 483 64.4
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.2e-185 653.7 468 67.9
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.5e-185 653.3 476 65.8
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.5e-185 653.3 498 63.1
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 2.0e-185 652.9 482 64.7
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 2.0e-185 652.9 476 64.9
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 3.4e-185 652.1 484 64.0
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 4.5e-185 651.7 475 65.7
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 4.5e-185 651.7 486 63.6
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.0e-184 650.6 500 62.4
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.3e-184 650.2 574 57.1
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.7e-184 649.8 526 58.9
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 2.2e-184 649.4 494 64.0
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.2e-184 649.4 476 64.1
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 2.9e-184 649.0 485 63.1
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 2.9e-184 649.0 511 61.6
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.5e-184 647.9 470 65.1
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.1e-183 647.1 499 63.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 4.2e-183 645.2 501 62.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.5e-183 644.8 496 63.3
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.1e-182 642.9 524 60.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.1e-182 642.9 506 61.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.7e-182 642.5 478 61.9
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.7e-182 642.5 461 66.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.7e-182 642.5 521 60.5
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.6e-182 642.1 496 62.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 4.7e-182 641.7 503 60.0
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.1e-182 641.3 519 61.3
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.3e-181 639.4 476 63.2
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.3e-181 639.4 505 60.6
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 2.0e-180 636.3 483 62.3
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 2.0e-180 636.3 479 62.6
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 5.7e-180 634.8 486 61.9
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 7.4e-180 634.4 481 62.8
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.3e-179 633.6 489 62.0
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.3e-179 633.6 507 60.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.7e-179 633.3 492 61.4
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 2.2e-179 632.9 494 61.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 2.2e-179 632.9 476 63.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 3.7e-179 632.1 476 63.0
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 4.8e-179 631.7 485 62.9
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.4e-178 630.2 477 62.7
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.6e-177 626.7 467 63.4
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.0e-176 624.0 477 61.4
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 3.8e-176 622.1 525 59.2
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 6.5e-176 621.3 481 61.3
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.9e-175 619.8 492 60.8
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.9e-175 619.8 492 61.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.5e-175 619.4 477 62.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 2.5e-175 619.4 476 61.6
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 4.2e-175 618.6 476 61.6
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 4.7e-174 615.1 509 61.1
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.4e-173 613.6 492 60.2
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 4.0e-173 612.1 476 62.0
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 5.2e-173 611.7 476 60.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.6e-172 609.4 490 59.8
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.8e-171 605.9 526 58.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.4e-170 602.8 501 58.5
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.1e-170 602.4 477 60.6
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 5.0e-168 595.1 457 62.1
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 6.5e-168 594.7 476 59.9
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.1e-167 594.0 476 60.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 1.9e-167 593.2 480 61.5
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.4e-165 587.0 476 59.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 4.0e-165 585.5 449 63.5
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.2e-163 579.7 442 62.2
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.1e-162 575.9 498 56.2
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.0e-162 574.7 425 65.9
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 7.7e-161 571.2 476 58.4
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.7e-160 570.1 506 54.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 5.9e-153 545.0 389 64.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.6e-148 529.6 498 55.0
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.8e-148 528.5 388 67.3
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.5e-143 513.8 398 63.6
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 7.3e-143 511.5 390 62.8
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 3.1e-141 506.1 486 53.1
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 5.8e-140 501.9 433 56.6
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 9.2e-138 494.6 388 60.3
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.1e-137 493.4 372 62.6
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 5.8e-132 475.3 448 50.0
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.3e-131 474.2 540 47.8
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 2.9e-131 473.0 349 63.9
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.6e-129 467.2 348 63.8
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 7.8e-129 464.9 509 47.9
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.9e-123 446.4 351 62.4
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.1e-122 444.5 331 63.4
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.2e-121 441.0 327 62.4
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.5e-121 439.5 499 46.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 4.6e-121 439.1 520 43.1
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 4.7e-118 429.1 412 53.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-115 420.6 321 63.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 3.2e-114 416.4 478 47.5
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.5e-113 412.9 347 57.1
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 7.8e-113 411.8 500 46.4
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 3.4e-108 396.4 292 63.4
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.8e-101 374.0 303 59.7
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.2e-100 371.3 303 59.1
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 7.9e-97 358.6 237 70.0
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 7.4e-95 352.1 251 69.3
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.0e-92 344.0 261 64.4
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.0e-92 344.0 255 62.4
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 6.9e-85 318.9 482 35.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.8e-78 297.0 207 66.2
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.4e-74 284.6 214 62.1
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.5e-68 264.6 207 61.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.7e-62 244.6 147 76.2
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.7e-57 227.3 159 64.2
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.3e-56 224.2 162 65.4
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.0e-53 212.6 164 62.8
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.9e-52 209.5 135 69.6
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.0e-35 155.6 164 43.9
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 2.5e-34 151.0 120 61.7
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 8.0e-33 146.0 209 42.6
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.9e-30 137.5 92 75.0
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 5.4e-29 133.3 89 71.9
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 7.0e-29 132.9 116 59.5
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.8e-28 129.4 110 60.0
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.3e-27 127.9 149 40.3
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.1e-26 125.6 91 69.2
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.5e-26 125.2 89 69.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.3e-22 112.1 88 63.6
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.9e-14 84.3 73 58.9
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 5.4e-13 80.1 72 52.8
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 6.0e-12 76.6 67 50.7


User provided reference genes

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