Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.0e-88 327.8 171 100.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.4e-34 149.4 175 53.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.1e-33 146.4 175 53.7
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.0e-32 144.1 172 51.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.5e-31 139.4 176 49.4
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 5.6e-31 138.3 165 47.3
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.3e-30 137.1 170 45.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 8.1e-30 134.4 170 50.0
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 8.1e-30 134.4 185 48.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.4e-29 133.7 181 44.2
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.8e-29 133.3 176 47.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 4.5e-28 128.6 179 45.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.8e-28 128.3 174 49.4
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.6e-28 127.9 177 46.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 7.6e-28 127.9 184 47.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 9.9e-28 127.5 192 46.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.3e-27 127.1 178 46.6
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.3e-27 127.1 185 40.5
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.9e-27 125.9 187 46.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.9e-27 125.9 182 46.2
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.9e-27 125.9 200 46.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.8e-27 125.6 142 54.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 4.9e-27 125.2 203 44.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 6.4e-27 124.8 183 46.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 6.4e-27 124.8 183 46.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.1e-26 124.0 182 45.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.4e-26 123.6 179 48.0
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.9e-26 123.2 191 39.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.4e-26 122.9 188 42.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.2e-26 122.5 181 45.9
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.4e-26 121.7 179 42.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.1e-26 121.3 194 39.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 9.3e-26 120.9 189 42.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 9.3e-26 120.9 202 40.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.6e-25 120.2 202 43.1
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.1e-25 119.8 189 43.4
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.1e-25 119.8 178 44.9
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.1e-25 119.8 193 40.9
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.5e-25 119.0 198 41.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.5e-25 119.0 188 43.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.0e-24 117.5 211 41.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-24 116.7 192 43.2
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-24 116.3 192 43.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.0e-24 115.9 203 41.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.9e-24 115.5 205 41.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.9e-24 115.5 205 41.5
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.9e-24 115.5 212 40.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 5.1e-24 115.2 226 39.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 5.1e-24 115.2 198 39.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 6.7e-24 114.8 180 40.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 8.7e-24 114.4 127 52.8
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 8.7e-24 114.4 177 40.1
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 8.7e-24 114.4 209 41.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.1e-23 114.0 188 44.7
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.1e-23 114.0 129 51.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.1e-23 114.0 202 38.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.5e-23 113.6 194 38.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-23 113.6 169 42.6
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.9e-23 113.2 204 38.7
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.5e-23 112.8 188 45.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.3e-23 112.5 179 45.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.3e-23 112.5 168 44.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.3e-23 112.5 175 42.3
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 4.3e-23 112.1 194 44.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 5.6e-23 111.7 188 43.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.6e-23 111.7 162 42.6
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.4e-23 111.3 180 45.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.4e-23 111.3 197 41.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 7.4e-23 111.3 201 40.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 7.4e-23 111.3 192 41.7
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 9.6e-23 110.9 198 40.9
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.3e-22 110.5 178 44.4
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.3e-22 110.5 240 38.3
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.3e-22 110.5 197 37.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.1e-22 109.8 140 46.4
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.8e-22 109.4 207 40.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.8e-22 109.4 178 39.3
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.8e-22 109.4 186 40.9
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 3.7e-22 109.0 183 40.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.7e-22 109.0 192 41.1
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 4.8e-22 108.6 203 37.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.2e-22 108.2 184 40.2
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 6.2e-22 108.2 195 40.5
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 8.1e-22 107.8 233 36.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.1e-21 107.5 221 35.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.4e-21 107.1 233 35.2
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.4e-21 106.3 209 34.9
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.4e-21 106.3 185 41.1
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.1e-21 105.9 190 42.1
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 4.0e-21 105.5 196 36.7
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.3e-21 105.1 181 43.1
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.3e-21 105.1 181 43.6
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 5.3e-21 105.1 193 40.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.3e-21 105.1 197 40.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.3e-21 105.1 227 36.6
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 5.3e-21 105.1 193 41.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 6.9e-21 104.8 169 40.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-21 104.4 162 38.3
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.0e-21 104.4 162 38.3
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 9.0e-21 104.4 178 43.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.5e-20 103.6 183 43.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-20 103.6 177 42.4
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-20 103.6 177 42.4
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-20 103.2 177 42.4
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.6e-20 102.8 205 40.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.6e-20 102.8 214 36.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.4e-20 102.4 147 44.9
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 3.4e-20 102.4 177 42.4
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.4e-20 102.4 213 39.4
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 4.5e-20 102.1 185 43.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.8e-20 101.7 179 41.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.8e-20 101.7 160 40.0
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-19 100.5 177 42.4
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-19 100.5 193 36.3
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.3e-19 100.5 185 42.7
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.7e-19 100.1 179 43.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.2e-19 99.8 238 36.1
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.8e-19 99.0 170 42.9
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-19 99.0 202 35.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.8e-19 99.0 198 39.9
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 6.5e-19 98.2 192 40.6
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 6.5e-19 98.2 192 38.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.4e-19 97.8 164 42.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-18 97.1 193 40.4
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-18 97.1 201 40.3
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-18 96.7 188 35.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.9e-18 96.7 189 41.8
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-18 96.3 177 36.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 7.1e-18 94.7 200 39.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 7.1e-18 94.7 200 39.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.1e-18 94.7 178 35.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 7.1e-18 94.7 208 35.1
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 9.3e-18 94.4 233 35.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-17 94.0 201 34.3
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-17 93.6 176 41.5
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-17 92.8 177 35.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 4.6e-17 92.0 171 34.5
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.0e-17 91.7 205 37.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 7.9e-17 91.3 162 37.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 7.9e-17 91.3 162 37.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 7.9e-17 91.3 206 34.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 7.9e-17 91.3 162 37.0
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.9e-17 91.3 184 36.4
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.0e-16 90.9 217 36.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-16 89.7 177 35.0
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.9e-16 89.0 206 34.0
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 5.1e-16 88.6 210 32.4
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.5e-15 87.0 177 34.5
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.5e-15 87.0 173 33.5
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 3.3e-15 85.9 177 33.9
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.3e-15 85.9 161 39.1
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.8e-14 82.8 218 33.5
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 4.8e-14 82.0 129 41.1
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 6.2e-14 81.6 115 44.3
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-13 80.9 155 34.2
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-13 80.5 213 35.7
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.4e-13 79.7 111 42.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.1e-13 79.3 158 32.9
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.0e-12 76.6 118 32.2
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-11 74.3 124 41.9
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-11 74.3 124 41.9
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.8e-11 72.4 118 29.7
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-11 72.0 127 40.2
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.0e-11 72.0 127 40.2
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.4e-11 71.2 213 31.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.5e-09 65.9 163 28.2
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 3.9e-08 62.4 135 30.4
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 5.1e-08 62.0 137 32.8
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.7e-08 61.6 125 31.2
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.1e-07 60.8 124 29.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.5e-07 60.5 90 37.8
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.3e-07 59.3 158 27.8
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 4.3e-07 58.9 146 30.8
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 9.7e-07 57.8 195 31.3
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 1.3e-06 57.4 128 32.0
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.6e-06 57.0 124 28.2
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 1.6e-06 57.0 140 27.1
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.2e-06 56.6 114 28.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.7e-06 55.8 121 37.2
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 4.8e-06 55.5 139 26.6
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.3e-06 55.1 118 28.8
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.2e-06 54.7 121 38.0


User provided reference genes

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