Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G058 Amborella trichopoda HOM05D003519 ORTHO05D004443 5.5e-144 514.2 249 100.0
ATR0138G021 Amborella trichopoda HOM05D003519 ORTHO05D004443 4.7e-127 458.0 236 91.9
ATR0527G001 Amborella trichopoda HOM05D003519 ORTHO05D004443 1.4e-70 270.4 148 87.8
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 2.9e-68 262.7 208 60.6
TAR229G0003 Trochodendron aralioides HOM05D003519 ORTHO05D004443 2.9e-68 262.7 211 60.2
TAR381G0828 Trochodendron aralioides HOM05D003519 ORTHO05D004443 2.9e-68 262.7 211 60.2
TAR625G0887 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.2e-66 257.3 207 59.4
Atru.chr4.987 Acer truncatum HOM05D003519 ORTHO05D004443 2.7e-66 256.1 218 55.5
Rhsim08G0000500 Rhododendron simsii HOM05D003519 ORTHO05D004443 4.6e-66 255.4 197 58.9
Cpa.g.sc37.5 Carica papaya HOM05D003519 ORTHO05D004443 7.8e-66 254.6 202 60.4
CSS0008781 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 2.3e-65 253.1 210 56.7
CSS0040411 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 2.3e-65 253.1 210 56.7
Hma1.2p1_0310F.1_g121010 Hydrangea macrophylla HOM05D003519 ORTHO05D004443 3.0e-65 252.7 201 59.2
CiPaw.03G118200 Carya illinoinensis HOM05D003519 ORTHO05D004443 8.7e-65 251.1 198 60.1
Manes.12G158800 Manihot esculenta HOM05D003519 ORTHO05D004443 2.5e-64 249.6 178 64.0
Sc09g0002240 Simmondsia chinensis HOM05D003519 ORTHO05D004443 2.5e-64 249.6 197 58.4
Ciclev10000587m.g Citrus clementina HOM05D003519 ORTHO05D004443 3.3e-64 249.2 212 55.2
TWI79G1726 Tripterygium wilfordii HOM05D003519 ORTHO05D004443 4.3e-64 248.8 210 58.1
Actinidia06577 Actinidia chinensis HOM05D003519 ORTHO05D004443 5.6e-64 248.4 218 53.2
arahy.Tifrunner.gnm1.ann1.JB39ED Arachis hypogaea HOM05D003519 ORTHO05D004443 5.6e-64 248.4 201 59.7
Nitab4.5_0000227g0340 Nicotiana tabacum HOM05D003519 ORTHO05D004443 5.6e-64 248.4 201 57.7
PGR102G0700 Punica granatum HOM05D003519 ORTHO05D004443 5.6e-64 248.4 197 59.9
arahy.Tifrunner.gnm1.ann1.CM19QL Arachis hypogaea HOM05D003519 ORTHO05D004443 7.3e-64 248.1 201 59.7
PGSC0003DMG400009336 Solanum tuberosum HOM05D003519 ORTHO05D004443 7.3e-64 248.1 211 56.9
Nitab4.5_0003068g0020 Nicotiana tabacum HOM05D003519 ORTHO05D004443 1.3e-63 247.3 201 57.2
PSO832G0337 Papaver somniferum HOM05D003519 ORTHO05D004443 1.6e-63 246.9 205 56.6
AUR62000513 Chenopodium quinoa HOM05D003519 ORTHO05D004443 3.6e-63 245.7 198 56.1
ECA238G3965 Erigeron canadensis HOM05D003519 ORTHO05D004443 6.2e-63 245.0 209 56.9
Solyc04g076520.3 Solanum lycopersicum HOM05D003519 ORTHO05D004443 6.2e-63 245.0 211 55.5
Thecc.01G137200 Theobroma cacao HOM05D003519 ORTHO05D004443 6.2e-63 245.0 178 62.4
Lj2A614T30 Lonicera japonica HOM05D003519 ORTHO05D004443 1.1e-62 244.2 206 54.4
QL10p041283 Quercus lobata HOM05D003519 ORTHO05D004443 1.1e-62 244.2 198 58.1
Eucgr.H05140 Eucalyptus grandis HOM05D003519 ORTHO05D004443 1.4e-62 243.8 176 63.6
Hund21800 Selenicereus undatus HOM05D003519 ORTHO05D004443 1.4e-62 243.8 179 61.5
Sopen04g030250 Solanum pennellii HOM05D003519 ORTHO05D004443 1.8e-62 243.4 211 55.5
GSVIVG01022332001 Vitis vinifera HOM05D003519 ORTHO05D004443 1.8e-62 243.4 178 63.5
VMungo1309G2829 Vigna mungo HOM05D003519 ORTHO05D004443 2.4e-62 243.0 184 60.3
Lalb_Chr11g0068601 Lupinus albus HOM05D003519 ORTHO05D004443 4.0e-62 242.3 198 58.1
Phvul.009G154700 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 4.0e-62 242.3 184 60.3
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 5.3e-62 241.9 215 53.5
arahy.Tifrunner.gnm1.ann1.02NDWK Arachis hypogaea HOM05D003519 ORTHO05D004443 9.0e-62 241.1 185 60.5
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 9.0e-62 241.1 177 63.8
Peaxi162Scf00711g00512 Petunia axillaris HOM05D003519 ORTHO05D004443 1.2e-61 240.7 211 54.5
CAN.G475.7 Capsicum annuum HOM05D003519 ORTHO05D004443 1.5e-61 240.4 224 53.1
Glyma.06G155700 Glycine max HOM05D003519 ORTHO05D004443 1.5e-61 240.4 178 61.8
Sabra07G0084100 Salix brachista HOM05D003519 ORTHO05D004443 1.5e-61 240.4 183 59.0
SEGI_06784 Sequoiadendron giganteum HOM05D003519 ORTHO05D004443 1.5e-61 240.4 199 57.3
Duzib187G0434 Durio zibethinus HOM05D003519 ORTHO05D004443 2.0e-61 240.0 178 61.8
Lsat_1_v5_gn_2_36940 Lactuca sativa HOM05D003519 ORTHO05D004443 2.0e-61 240.0 206 55.3
TPR.G33582 Trifolium pratense HOM05D003519 ORTHO05D004443 2.0e-61 240.0 200 58.0
CDE06G0958 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 2.6e-61 239.6 181 61.3
MD15G1134900 Malus domestica HOM05D003519 ORTHO05D004443 2.6e-61 239.6 230 50.9
arahy.Tifrunner.gnm1.ann1.I6W5T3 Arachis hypogaea HOM05D003519 ORTHO05D004443 4.5e-61 238.8 185 60.0
Medtr3g096670 Medicago truncatula HOM05D003519 ORTHO05D004443 4.5e-61 238.8 201 57.7
ATR1000G001 Amborella trichopoda HOM05D003519 ORTHO05D004443 7.6e-61 238.0 133 85.0
Sabra05G0055300 Salix brachista HOM05D003519 ORTHO05D004443 1.7e-60 236.9 179 59.2
CANSAT80G2376 Cannabis sativa HOM05D003519 ORTHO05D004443 2.2e-60 236.5 203 55.2
CDE08G0134 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 2.2e-60 236.5 181 59.7
ClCG04G002210 Citrullus lanatus HOM05D003519 ORTHO05D004443 2.2e-60 236.5 200 56.5
Haze_25334 Corylus avellana HOM05D003519 ORTHO05D004443 2.9e-60 236.1 201 55.7
Psat5g059880 Pisum sativum HOM05D003519 ORTHO05D004443 2.9e-60 236.1 201 56.2
EL10Ac4g09622 Beta vulgaris HOM05D003519 ORTHO05D004443 3.8e-60 235.7 180 58.9
MBI03_g39654_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 3.8e-60 235.7 198 56.6
Glyma.08G002000 Glycine max HOM05D003519 ORTHO05D004443 4.9e-60 235.3 177 60.5
Glyma.05G194000 Glycine max HOM05D003519 ORTHO05D004443 6.4e-60 235.0 177 59.9
Potri.007G102000 Populus trichocarpa HOM05D003519 ORTHO05D004443 6.4e-60 235.0 202 54.5
Prupe.4G275200 Prunus persica HOM05D003519 ORTHO05D004443 1.1e-59 234.2 201 56.2
MELO3C008911.2 Cucumis melo HOM05D003519 ORTHO05D004443 1.4e-59 233.8 200 55.5
Ca_16980_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 1.9e-59 233.4 195 57.4
THA.LOC104819485 Tarenaya hassleriana HOM05D003519 ORTHO05D004443 1.9e-59 233.4 191 57.6
RcHm_v2.0_Chr2g0122451 Rosa chinensis HOM05D003519 ORTHO05D004443 3.2e-59 232.6 207 53.6
CsaV3_4G030500 Cucumis sativus L. HOM05D003519 ORTHO05D004443 4.2e-59 232.3 200 55.5
Gohir.D04G033200 Gossypium hirsutum HOM05D003519 ORTHO05D004443 9.3e-59 231.1 207 53.6
Gorai.012G036900 Gossypium raimondii HOM05D003519 ORTHO05D004443 9.3e-59 231.1 207 53.6
Gohir.A05G382700 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.6e-58 230.3 207 53.1
Potri.005G067300 Populus trichocarpa HOM05D003519 ORTHO05D004443 2.7e-58 229.6 179 58.1
Phvul.002G274400 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 4.6e-58 228.8 184 57.6
Aqoxy5G02420 Aquilegia oxysepala HOM05D003519 ORTHO05D004443 1.0e-57 227.6 206 51.9
VMungo0251G1228 Vigna mungo HOM05D003519 ORTHO05D004443 1.0e-57 227.6 201 54.2
PSO832G1142 Papaver somniferum HOM05D003519 ORTHO05D004443 3.0e-57 226.1 206 52.4
Sed0005441 Sechium edule HOM05D003519 ORTHO05D004443 3.0e-57 226.1 201 54.7
Lalb_Chr23g0272671 Lupinus albus HOM05D003519 ORTHO05D004443 8.7e-57 224.6 187 56.1
SGA_v2.0_scaffold3G01832 Striga asiatica HOM05D003519 ORTHO05D004443 8.7e-57 224.6 177 59.3
Oeu050088.1 Olea europaea HOM05D003519 ORTHO05D004443 1.5e-56 223.8 199 52.8
Oeu050089.1 Olea europaea HOM05D003519 ORTHO05D004443 1.5e-56 223.8 199 52.8
Ah.04g157880 Amaranthus hybridus HOM05D003519 ORTHO05D004443 2.5e-56 223.0 191 54.5
Cc00_g06200 Coffea canephora HOM05D003519 ORTHO05D004443 2.5e-56 223.0 174 56.9
Migut.L00523 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.5e-56 223.0 194 56.2
Migut.L00372 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.3e-56 222.2 203 54.7
Migut.L00383 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.3e-56 222.2 203 55.2
Migut.O00452 Erythranthe guttata HOM05D003519 ORTHO05D004443 9.6e-56 221.1 194 55.2
FAN28G0413 Fragaria x ananassa HOM05D003519 ORTHO05D004443 9.6e-56 221.1 179 56.4
FAN19G3005 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.3e-55 220.7 179 56.4
FvH4_1g24840 Fragaria vesca HOM05D003519 ORTHO05D004443 2.8e-55 219.5 179 56.4
FAN26G0860 Fragaria x ananassa HOM05D003519 ORTHO05D004443 2.8e-55 219.5 179 55.9
SalBow5G2644 Salvia bowleyana HOM05D003519 ORTHO05D004443 2.8e-55 219.5 223 48.9
MSTRG.15264 Avicennia marina HOM05D003519 ORTHO05D004443 4.8e-55 218.8 198 54.0
Aa31LG9G16540 Aethionema arabicum HOM05D003519 ORTHO05D004443 1.8e-54 216.9 187 52.9
FAN23G1921 Fragaria x ananassa HOM05D003519 ORTHO05D004443 2.4e-54 216.5 179 55.9
Migut.L00387 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.1e-54 216.1 197 54.8
A04p12190 Brassica napus HOM05D003519 ORTHO05D004443 4.0e-54 215.7 184 55.4
BraA04t16883Z Brassica rapa HOM05D003519 ORTHO05D004443 4.0e-54 215.7 184 55.4
Migut.L00388 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.2e-53 214.2 177 54.2
BcaB06g27330 Brassica carinata HOM05D003519 ORTHO05D004443 2.0e-53 213.4 189 52.4
BcaB06g27308 Brassica carinata HOM05D003519 ORTHO05D004443 3.4e-53 212.6 189 52.9
C04p45840 Brassica napus HOM05D003519 ORTHO05D004443 3.4e-53 212.6 189 52.9
BolC4t26170H Brassica oleracea HOM05D003519 ORTHO05D004443 3.4e-53 212.6 189 52.9
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.3e-52 210.7 202 54.0
Migut.L00389 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.9e-52 209.5 177 52.5
TPR.G37338 Trifolium pratense HOM05D003519 ORTHO05D004443 2.9e-52 209.5 174 56.9
CARHR262900 Cardamine hirsuta HOM05D003519 ORTHO05D004443 4.9e-52 208.8 190 52.1
Psat7g045400 Pisum sativum HOM05D003519 ORTHO05D004443 4.9e-52 208.8 184 54.3
BcaB06g27331 Brassica carinata HOM05D003519 ORTHO05D004443 8.4e-52 208.0 213 50.2
Ca_17623_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 1.4e-51 207.2 218 50.5
Thhalv10027700m.g Eutrema salsugineum HOM05D003519 ORTHO05D004443 1.4e-51 207.2 188 54.8
Carub.0007s3648 Capsella rubella HOM05D003519 ORTHO05D004443 3.2e-51 206.1 191 52.9
BcaB06g27312 Brassica carinata HOM05D003519 ORTHO05D004443 7.1e-51 204.9 213 49.8
C04p45890 Brassica napus HOM05D003519 ORTHO05D004443 7.1e-51 204.9 213 49.8
BolC4t26171H Brassica oleracea HOM05D003519 ORTHO05D004443 7.1e-51 204.9 213 49.8
Pp3c14_13020 Physcomitrium patens HOM05D003519 ORTHO05D004443 7.1e-51 204.9 181 56.4
Medtr8g094190 Medicago truncatula HOM05D003519 ORTHO05D004443 1.6e-50 203.8 180 55.0
Migut.L00375 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.7e-50 203.0 185 52.4
AT5G39450 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 4.6e-50 202.2 189 52.9
CARHR262850 Cardamine hirsuta HOM05D003519 ORTHO05D004443 4.6e-50 202.2 185 52.4
Pp3c17_16670 Physcomitrium patens HOM05D003519 ORTHO05D004443 4.6e-50 202.2 181 55.2
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 6.0e-50 201.8 168 55.4
BraA04t16884Z Brassica rapa HOM05D003519 ORTHO05D004443 1.0e-49 201.1 213 48.8
AL7G50860 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 2.3e-49 199.9 189 52.4
A04p12200 Brassica napus HOM05D003519 ORTHO05D004443 3.0e-49 199.5 181 54.1
Sp7g02470 Schrenkiella parvula HOM05D003519 ORTHO05D004443 5.1e-49 198.7 188 51.1
Migut.L00374 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.3e-48 196.1 178 53.9
Sp7g02520 Schrenkiella parvula HOM05D003519 ORTHO05D004443 3.3e-48 196.1 188 50.0
CARHR262890 Cardamine hirsuta HOM05D003519 ORTHO05D004443 5.6e-48 195.3 179 53.1
BcaB06g27309 Brassica carinata HOM05D003519 ORTHO05D004443 9.6e-48 194.5 187 52.4
C04p45850 Brassica napus HOM05D003519 ORTHO05D004443 9.6e-48 194.5 222 46.8
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 1.3e-47 194.1 187 52.9
Sp7g02490 Schrenkiella parvula HOM05D003519 ORTHO05D004443 2.1e-47 193.4 177 51.4
HPP92_025170 Vanilla planifolia HOM05D003519 ORTHO05D004443 2.1e-47 193.4 175 55.4
AT5G39460 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 8.2e-47 191.4 176 53.4
AL7G50820 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.4e-46 190.7 177 52.0
AL7G50850 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.8e-46 190.3 177 53.1
Migut.L00382 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.4e-46 189.9 170 52.4
Migut.L00522 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.0e-46 189.1 170 51.2
CARHR258220 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.2e-45 187.6 179 52.0
A04p12230 Brassica napus HOM05D003519 ORTHO05D004443 2.6e-45 186.4 210 47.6
CARHR262880 Cardamine hirsuta HOM05D003519 ORTHO05D004443 2.6e-45 186.4 180 51.7
C04p45870 Brassica napus HOM05D003519 ORTHO05D004443 7.6e-45 184.9 208 44.2
BcaB06g27311 Brassica carinata HOM05D003519 ORTHO05D004443 1.0e-44 184.5 177 47.5
AL7G50830 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 2.2e-44 183.3 177 50.8
AT5G39480 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 2.2e-44 183.3 177 50.8
AT5G39490 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 4.9e-44 182.2 187 47.6
PSO063G4810 Papaver somniferum HOM05D003519 ORTHO05D004443 4.9e-44 182.2 158 54.4
A04p12220 Brassica napus HOM05D003519 ORTHO05D004443 1.1e-43 181.0 163 50.9
Migut.L00373 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.5e-43 178.7 167 52.1
AagrBONN_evm.TU.Sc2ySwM_228.359 Anthoceros agrestis HOM05D003519 ORTHO05D004443 4.6e-42 175.6 189 47.6
BcaC02g08848 Brassica carinata HOM05D003519 ORTHO05D021767 1.9e-40 170.2 163 52.8
BcaC02g08849 Brassica carinata HOM05D003519 ORTHO05D021767 1.9e-40 170.2 163 52.8
BcaB06g27739 Brassica carinata HOM05D003519 ORTHO05D004443 9.7e-40 167.9 187 47.6
PSO063G6904 Papaver somniferum HOM05D003519 ORTHO05D004443 9.0e-38 161.4 130 59.2
BcaB06g27333 Brassica carinata HOM05D003519 ORTHO05D004443 1.6e-34 150.6 139 51.1
BcaB06g27313 Brassica carinata HOM05D003519 ORTHO05D024023 3.6e-34 149.4 192 42.7
BolC4t26573H Brassica oleracea HOM05D003519 ORTHO05D021767 1.0e-33 147.9 186 46.2
Os08g0105100 Oryza sativa ssp. japonica HOM05D003519 ORTHO05D004443 1.5e-29 134.0 190 43.2
Zm00001eb174460 Zea mays HOM05D003519 ORTHO05D004443 2.6e-29 133.3 180 41.7
Sp7g02530 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.0e-28 131.3 107 58.9
Migut.L00524 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.8e-28 129.4 217 36.4
Migut.L00385 Erythranthe guttata HOM05D003519 ORTHO05D004443 4.2e-27 125.9 125 50.4
Medtr8g094150 Medicago truncatula HOM05D003519 ORTHO05D004443 2.1e-26 123.6 162 45.1
BraA04t17193Z Brassica rapa HOM05D003519 ORTHO05D021767 1.4e-22 110.9 128 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1512 Anthoceros agrestis HOM05D003519 ORTHO05D021294 5.9e-21 105.5 131 42.0
C04p49850 Brassica napus HOM05D003519 ORTHO05D021767 1.3e-20 104.4 91 57.1
A04p15580 Brassica napus HOM05D003519 ORTHO05D021767 5.0e-20 102.4 91 56.0
C04p45910 Brassica napus HOM05D003519 ORTHO05D024023 6.1e-18 95.5 100 48.0
Migut.L00384 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.4e-17 94.4 79 55.7
BolC4t26173H Brassica oleracea HOM05D003519 ORTHO05D024023 1.8e-17 94.0 100 47.0
CBR_g8652 Chara braunii HOM05D000744 ORTHO05D000332 1.3e-15 87.8 162 32.7
Migut.L00386 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.7e-13 78.6 85 48.2
Lj4g0010335 Lotus japonicus HOM05D003519 ORTHO05D004443 3.8e-12 76.3 72 51.4
Migut.L00566 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.2e-11 73.2 86 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2589 Anthoceros agrestis HOM05D026239 ORTHO05D021294 2.3e-09 67.0 163 30.1
PSO832G2795 Papaver somniferum HOM05D003519 ORTHO05D004443 2.6e-08 63.5 59 50.8
AT5G39470 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 2.2e-07 60.5 91 34.1


User provided reference genes

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