Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.8e-97 358.6 179 100.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.9e-53 213.0 179 60.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.7e-52 209.1 185 60.5
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 6.1e-52 208.0 183 57.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.0e-51 205.7 140 73.6
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 5.1e-51 204.9 185 60.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.7e-51 204.1 187 57.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 8.7e-51 204.1 195 57.9
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.5e-50 203.4 183 59.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.5e-50 202.6 184 58.7
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.3e-50 202.2 185 60.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.3e-50 201.8 182 58.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 9.7e-50 200.7 189 56.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 9.7e-50 200.7 128 71.9
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 9.7e-50 200.7 183 59.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.6e-49 199.9 184 59.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.6e-49 199.9 179 58.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.2e-49 199.5 195 57.4
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.8e-49 199.1 185 59.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.7e-49 198.7 189 60.3
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 4.8e-49 198.4 182 58.8
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 4.8e-49 198.4 185 56.8
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 6.3e-49 198.0 184 59.8
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-48 197.2 189 57.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-48 197.2 180 55.6
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-48 197.2 183 59.0
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-48 197.2 183 58.5
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.4e-48 196.8 181 58.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.1e-48 195.7 191 57.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.1e-48 195.7 191 58.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 3.1e-48 195.7 184 60.9
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.1e-48 195.3 189 56.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 5.3e-48 194.9 185 57.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.9e-48 194.5 191 57.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 6.9e-48 194.5 184 57.1
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.9e-48 194.5 183 59.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.9e-48 194.5 182 58.8
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.2e-47 193.7 186 59.1
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-47 193.4 184 57.1
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.5e-47 193.4 183 59.6
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.5e-47 193.4 183 59.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.0e-47 193.0 184 58.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.0e-47 193.0 181 56.4
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.6e-47 192.6 129 69.8
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.6e-47 192.6 184 57.1
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.4e-47 192.2 187 56.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.4e-47 192.2 180 59.4
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 4.5e-47 191.8 166 59.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 5.9e-47 191.4 129 69.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 5.9e-47 191.4 191 56.0
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.7e-47 191.0 186 57.5
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.0e-46 190.7 129 69.8
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.0e-46 190.7 184 56.0
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.0e-46 190.7 183 57.4
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.3e-46 190.3 188 54.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.3e-46 190.3 189 52.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-46 189.9 183 57.9
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.7e-46 189.9 187 56.7
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.7e-46 189.9 184 56.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.7e-46 189.9 180 52.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.2e-46 189.5 183 59.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.9e-46 189.1 184 56.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 3.8e-46 188.7 178 57.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.8e-46 188.7 187 56.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 3.8e-46 188.7 185 56.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.8e-46 188.7 183 55.7
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 5.0e-46 188.3 178 56.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 6.5e-46 188.0 129 70.5
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 8.5e-46 187.6 182 53.3
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 8.5e-46 187.6 184 54.9
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-45 186.8 184 54.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.9e-45 186.4 198 54.0
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.9e-45 186.4 129 67.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.5e-45 186.0 184 55.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.5e-45 186.0 182 56.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.5e-45 186.0 190 53.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.2e-45 185.7 129 67.4
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-45 185.3 139 64.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 4.2e-45 185.3 182 53.8
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 5.5e-45 184.9 184 53.3
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 7.2e-45 184.5 129 68.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 7.2e-45 184.5 191 54.5
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 9.4e-45 184.1 129 67.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 9.4e-45 184.1 129 67.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.2e-44 183.7 130 66.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.6e-44 183.3 192 52.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.7e-44 182.6 183 55.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.7e-44 182.6 129 66.7
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.0e-43 180.6 222 48.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.0e-43 180.6 183 53.6
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.4e-43 180.3 186 52.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.4e-43 180.3 155 58.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.8e-43 179.9 130 66.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.9e-43 178.7 146 61.6
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.9e-43 178.7 155 57.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.9e-43 178.7 183 54.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 6.7e-43 177.9 150 60.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 8.8e-43 177.6 130 63.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.0e-42 176.4 183 54.1
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.5e-42 176.0 150 58.0
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 3.3e-42 175.6 184 52.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.3e-42 175.6 141 62.4
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.3e-42 175.3 165 57.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 9.7e-42 174.1 223 47.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 9.7e-42 174.1 169 55.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.3e-41 173.7 194 53.6
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.7e-41 173.3 180 53.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.2e-41 172.9 183 55.2
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-41 172.9 130 65.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 2.8e-41 172.6 157 59.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.8e-41 171.8 190 52.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.1e-40 169.1 115 67.0
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.1e-40 169.1 123 61.0
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 3.1e-40 169.1 136 64.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 4.1e-40 168.7 129 63.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 4.1e-40 168.7 195 50.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.3e-40 168.3 158 58.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-39 167.2 114 69.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.5e-39 166.8 150 58.7
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 5.9e-39 164.9 247 41.7
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.8e-38 162.2 123 60.2
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.0e-38 161.8 158 55.7
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.5e-37 159.5 192 47.9
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 4.2e-37 158.7 116 64.7
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 9.4e-37 157.5 271 38.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.1e-34 150.6 189 42.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.1e-28 129.8 128 50.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 8.0e-28 127.9 144 52.8
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.0e-28 127.9 83 72.3
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.9e-27 125.6 87 69.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-26 123.6 149 50.3
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.7e-25 120.2 77 68.8
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.1e-24 115.9 130 55.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.0e-22 110.9 104 47.1
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.6e-20 103.6 73 67.1
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.8e-19 100.1 72 63.9
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.8e-19 100.1 166 33.1
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.0e-19 99.0 72 62.5
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 8.3e-17 91.3 66 66.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.5e-15 85.5 110 45.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.7e-14 83.6 65 56.9
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.1e-08 62.4 88 51.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.0e-06 57.8 59 47.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.8e-06 55.8 35 62.9


User provided reference genes

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