Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 9.9e-155 550.1 274 100.0
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.9e-49 200.3 226 47.8
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.3e-49 199.5 224 49.6
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 5.6e-49 198.7 241 47.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 9.6e-49 198.0 251 47.4
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.1e-48 196.8 234 47.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.8e-48 196.4 252 46.8
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 8.1e-48 194.9 249 46.2
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-47 194.1 236 46.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-47 194.1 236 46.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-47 194.1 236 49.2
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.4e-47 193.4 246 45.1
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-47 193.0 252 45.6
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.1e-47 193.0 235 47.7
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 5.3e-47 192.2 238 45.8
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.0e-46 190.3 234 47.9
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.0e-46 190.3 246 45.5
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.6e-46 189.9 227 46.3
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.4e-46 189.5 253 45.1
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 7.6e-46 188.3 236 46.2
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 7.6e-46 188.3 249 44.2
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.7e-45 187.2 237 45.1
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.7e-45 187.2 246 47.6
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.7e-45 187.2 246 44.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.2e-45 186.8 253 45.8
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 2.9e-45 186.4 226 49.1
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.8e-45 186.0 253 45.8
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 6.4e-45 185.3 225 47.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 8.4e-45 184.9 238 44.1
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.4e-45 184.9 238 44.1
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 8.4e-45 184.9 240 45.0
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.1e-44 184.5 237 43.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.4e-44 183.3 243 47.3
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.4e-44 183.3 237 43.9
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.4e-44 183.3 229 47.2
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.2e-44 183.0 237 43.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.2e-44 182.6 239 43.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 4.2e-44 182.6 251 42.6
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 4.2e-44 182.6 234 44.4
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 5.4e-44 182.2 233 43.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 7.1e-44 181.8 246 44.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 7.1e-44 181.8 227 47.1
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 7.1e-44 181.8 237 44.7
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 7.1e-44 181.8 220 46.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-43 181.0 236 44.9
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-43 181.0 236 44.9
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.6e-43 180.6 247 44.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.7e-43 179.9 237 44.3
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.7e-43 179.9 244 44.3
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.7e-43 179.9 212 48.6
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.5e-43 179.5 232 44.8
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 4.6e-43 179.1 234 48.3
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.6e-43 179.1 229 46.3
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 6.0e-43 178.7 250 46.4
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.0e-43 178.7 237 45.1
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 6.0e-43 178.7 236 44.9
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.8e-42 177.2 230 43.9
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.8e-42 177.2 222 46.4
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.3e-42 176.8 251 43.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 3.0e-42 176.4 239 43.5
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 3.9e-42 176.0 236 43.2
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.9e-42 176.0 251 43.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 5.1e-42 175.6 238 42.4
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 6.7e-42 175.3 251 41.8
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.1e-41 174.5 244 42.6
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.5e-41 174.1 224 47.8
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.5e-41 174.1 213 46.0
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.9e-41 173.7 237 42.6
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 4.3e-41 172.6 226 45.1
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.6e-41 172.2 251 41.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.6e-41 172.2 238 42.4
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 9.6e-41 171.4 233 44.2
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.6e-41 171.4 238 41.2
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.6e-41 171.4 225 43.6
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.3e-40 171.0 251 41.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 1.6e-40 170.6 226 46.0
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-40 170.6 249 43.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-40 170.6 249 43.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.6e-40 170.6 238 42.0
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.8e-40 169.9 229 43.2
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.8e-40 169.9 227 42.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.7e-40 169.5 252 39.7
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 6.2e-40 168.7 229 43.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.2e-40 168.7 211 46.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-39 167.9 238 43.7
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.4e-39 166.8 238 42.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 2.4e-39 166.8 252 40.1
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 3.1e-39 166.4 239 41.4
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.0e-39 166.0 228 43.9
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 5.3e-39 165.6 242 42.1
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.3e-39 165.6 226 42.5
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 5.3e-39 165.6 227 45.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.3e-39 165.6 252 43.3
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 5.3e-39 165.6 268 41.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 6.9e-39 165.2 242 41.7
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 9.0e-39 164.9 240 41.7
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 9.0e-39 164.9 238 40.8
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 9.0e-39 164.9 226 44.2
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.2e-38 164.5 238 41.6
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.2e-38 164.5 238 39.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.5e-38 164.1 215 44.2
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.5e-38 164.1 207 44.4
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.4e-38 162.9 232 41.8
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 3.4e-38 162.9 216 44.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 4.5e-38 162.5 226 42.0
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.8e-38 162.2 226 41.2
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 2.2e-37 160.2 204 45.1
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 4.9e-37 159.1 229 41.5
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.1e-36 157.9 215 41.4
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 3.2e-36 156.4 237 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 9.3e-36 154.8 202 43.6
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 3.9e-34 149.4 249 36.5
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 8.7e-34 148.3 161 50.9
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.3e-33 146.4 160 49.4
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 5.6e-33 145.6 240 39.2
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.8e-31 140.6 296 35.1
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.9e-31 138.7 206 42.2
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 5.8e-30 135.6 237 39.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 7.1e-28 128.6 235 34.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.7e-27 126.7 199 40.2
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 5.1e-26 122.5 225 36.4
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-24 117.9 167 43.7
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.8e-24 115.9 184 40.2
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.4e-23 114.4 173 40.5
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-23 114.0 184 40.8
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.3e-23 112.5 184 39.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-22 110.5 184 39.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-22 110.5 184 39.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-22 110.5 184 39.7
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.6e-22 110.2 177 40.1
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 6.5e-21 105.5 203 36.9
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 7.2e-20 102.1 142 42.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.6e-19 100.9 131 45.8
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.5e-17 94.4 229 30.6
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.9e-17 94.0 148 39.2
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 4.8e-16 89.4 88 47.7
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.4e-14 83.2 84 50.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.2e-13 80.5 169 32.5
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 3.8e-13 79.7 90 44.4
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 8.5e-13 78.6 102 42.2
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.1e-12 78.2 118 38.1
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.4e-12 77.8 94 44.7
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.7e-10 68.9 45 71.1
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.3e-09 66.6 45 71.1
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.4e-06 56.6 110 38.2


User provided reference genes

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