Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 2.2e-199 698.7 351 100.0
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 1.4e-129 466.8 353 67.4
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 4.1e-129 465.3 354 65.8
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 3.6e-125 452.2 352 66.5
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 6.0e-120 434.9 326 66.6
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.7e-119 433.3 350 63.1
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 1.2e-117 427.2 351 63.0
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 2.1e-117 426.4 319 67.7
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 1.1e-116 424.1 351 61.3
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 1.8e-116 423.3 351 61.5
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 2.3e-116 422.9 313 67.4
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 6.8e-116 421.4 314 65.9
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 6.8e-116 421.4 313 66.1
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 8.9e-116 421.0 351 61.8
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 8.9e-116 421.0 312 66.7
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 5.8e-115 418.3 309 67.6
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.3e-114 417.2 309 67.3
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.7e-114 416.8 309 67.6
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 3.7e-114 415.6 366 59.0
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 4.9e-114 415.2 351 60.7
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 9.2e-113 411.0 351 59.8
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 9.2e-113 411.0 320 63.4
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 1.6e-112 410.2 351 59.8
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 4.6e-112 408.7 306 65.7
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 7.8e-112 407.9 351 60.1
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 1.7e-111 406.8 321 64.5
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 3.9e-111 405.6 303 65.7
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 5.1e-111 405.2 306 67.0
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 8.6e-111 404.4 351 58.7
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 4.3e-110 402.1 351 58.7
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 5.6e-110 401.7 312 64.4
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 5.6e-110 401.7 312 64.4
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 9.6e-110 401.0 312 64.7
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 3.6e-109 399.1 316 64.6
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 8.1e-109 397.9 357 58.8
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 8.1e-109 397.9 344 58.4
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 1.1e-108 397.5 344 58.4
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 3.1e-108 396.0 308 64.9
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 3.1e-108 396.0 308 64.9
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 4.0e-108 395.6 309 64.7
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 5.2e-108 395.2 357 58.0
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 8.9e-108 394.4 306 65.4
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 3.4e-107 392.5 353 57.5
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 5.8e-107 391.7 327 60.2
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 7.6e-107 391.3 317 62.1
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.7e-106 390.2 307 63.2
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.7e-106 390.2 308 63.3
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 2.2e-106 389.8 292 67.5
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 6.4e-106 388.3 312 61.5
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 8.4e-106 387.9 351 57.0
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 1.2e-104 384.0 306 62.7
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 1.2e-104 384.0 349 57.0
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 1.2e-104 384.0 306 61.4
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 1.6e-104 383.6 313 62.0
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 2.7e-104 382.9 311 62.7
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 4.6e-104 382.1 310 61.6
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 6.0e-104 381.7 302 62.3
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.3e-103 380.6 299 63.5
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.0e-103 379.4 312 61.2
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 3.9e-103 379.0 293 64.8
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 2.5e-102 376.3 310 61.3
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 1.3e-101 374.0 349 55.3
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 1.8e-100 370.2 264 67.0
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 9.0e-100 367.9 347 56.5
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 1.5e-99 367.1 303 62.4
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 2.6e-99 366.3 357 56.6
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 2.6e-99 366.3 312 58.3
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 3.8e-98 362.5 309 57.9
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 6.4e-98 361.7 309 58.3
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 1.1e-97 360.9 309 58.3
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 1.9e-97 360.1 280 66.8
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.9e-97 360.1 328 57.0
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 4.2e-97 359.0 296 61.5
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 5.4e-97 358.6 311 57.6
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.2e-96 357.5 309 57.6
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 3.5e-96 355.9 302 58.9
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.0e-95 354.4 353 53.3
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.3e-95 354.0 353 53.5
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 2.3e-95 353.2 313 59.4
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 6.6e-95 351.7 317 56.5
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 8.7e-95 351.3 309 57.9
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 1.1e-94 350.9 306 58.2
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.1e-94 350.9 353 53.0
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 1.9e-94 350.1 273 62.6
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 3.3e-94 349.4 310 57.1
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 9.6e-94 347.8 306 54.9
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 9.6e-94 347.8 302 57.0
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 2.8e-93 346.3 296 58.4
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.4e-92 344.0 312 57.1
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 6.9e-92 341.7 282 61.7
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 1.3e-90 337.4 403 46.9
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 3.8e-90 335.9 311 56.6
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.1e-89 334.3 238 66.8
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 5.1e-87 325.5 260 60.8
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 1.5e-86 323.9 311 54.3
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 5.6e-86 322.0 317 54.6
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.8e-84 317.0 281 60.5
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 2.4e-84 316.6 353 49.9
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 1.6e-80 303.9 306 50.0
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 2.7e-72 276.6 314 52.2
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 8.7e-71 271.6 201 66.2
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 7.7e-51 205.3 361 36.8
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 9.4e-49 198.4 328 39.0
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 8.8e-47 191.8 232 49.6
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.3e-42 177.9 133 64.7
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.7e-42 177.6 297 38.4
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 5.5e-41 172.6 274 36.1
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.6e-40 171.0 342 32.7
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 4.7e-40 169.5 224 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 6.1e-40 169.1 362 33.4
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 7.0e-36 155.6 231 41.6
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 6.3e-29 132.5 240 37.9
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 1.8e-28 131.0 133 51.1
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 3.5e-27 126.7 164 47.0
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 2.0e-22 110.9 77 71.4
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 1.1e-12 78.6 141 35.5
SEGI_34387 Sequoiadendron giganteum HOM05D006939 ORTHO05D008616 1.2e-06 58.5 74 55.4


User provided reference genes

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