Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.2e-217 758.8 422 100.0
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.2e-164 583.6 384 84.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.2e-160 568.5 384 80.5
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.6e-159 565.1 384 79.7
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.0e-158 563.9 384 77.3
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.3e-157 558.9 374 81.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 4.8e-156 555.1 384 76.0
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 8.1e-156 554.3 384 77.6
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.4e-155 553.5 384 76.8
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.4e-155 553.5 384 80.2
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.6e-154 549.3 384 76.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 3.4e-154 548.9 384 78.4
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 9.9e-154 547.4 385 77.4
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 9.9e-154 547.4 382 79.6
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.3e-153 547.0 384 78.9
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-153 546.6 374 80.5
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.2e-153 546.2 384 80.2
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 2.2e-153 546.2 384 75.5
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 3.2e-152 542.3 365 78.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 9.3e-152 540.8 388 78.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.6e-151 540.0 369 79.1
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 3.5e-151 538.9 381 75.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 3.5e-151 538.9 384 79.2
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.5e-151 538.9 385 75.6
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.5e-151 538.9 384 77.9
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 4.6e-151 538.5 384 78.1
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 4.6e-151 538.5 369 82.7
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 4.6e-151 538.5 369 82.7
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.0e-150 537.3 384 78.9
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.3e-150 537.0 384 75.0
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.0e-150 535.8 353 80.5
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.1e-149 533.9 384 75.5
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 1.5e-149 533.5 395 76.7
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.5e-149 533.5 359 79.4
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.5e-149 532.7 386 78.0
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 5.6e-149 531.6 386 75.4
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 5.6e-149 531.6 372 76.6
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 5.6e-149 531.6 365 77.8
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.4e-149 531.2 366 81.4
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.3e-148 530.4 384 77.9
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 3.7e-148 528.9 366 77.6
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 6.2e-148 528.1 361 77.6
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 6.2e-148 528.1 365 77.5
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.1e-147 525.8 372 79.0
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.1e-147 525.8 359 78.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 9.0e-147 524.2 385 77.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 9.0e-147 524.2 369 82.1
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.2e-146 523.9 385 77.4
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.7e-145 520.0 365 79.2
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.7e-145 520.0 384 73.2
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.7e-145 520.0 385 74.8
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.7e-145 520.0 404 76.0
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 2.9e-145 519.2 353 79.6
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.9e-145 518.5 353 79.3
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 6.4e-145 518.1 365 78.9
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.4e-144 516.9 353 83.3
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.9e-144 516.5 382 72.0
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.4e-144 516.2 359 78.6
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 4.6e-143 511.9 369 76.2
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 6.0e-143 511.5 358 79.1
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.8e-142 510.0 350 82.3
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.3e-141 505.8 369 74.0
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.3e-141 505.4 352 80.7
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.6e-140 503.4 357 75.1
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.8e-140 502.7 370 74.3
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 6.2e-140 501.5 361 75.3
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 4.0e-139 498.8 385 74.0
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.3e-139 498.4 369 78.0
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 5.3e-139 498.4 356 79.2
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 6.9e-139 498.0 361 80.3
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 9.0e-139 497.7 337 83.1
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.9e-137 491.9 376 76.9
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 8.4e-137 491.1 351 77.5
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.4e-136 490.3 355 81.7
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 7.1e-136 488.0 365 75.3
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 9.3e-136 487.6 365 74.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 4.6e-135 485.3 371 73.6
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.9e-135 484.6 366 72.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.3e-134 483.8 366 73.8
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.5e-133 480.3 352 75.3
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.5e-133 480.3 382 69.4
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.9e-133 479.9 368 73.6
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-133 479.6 352 75.3
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 7.4e-133 478.0 361 75.1
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 9.7e-133 477.6 352 75.0
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.3e-132 477.2 396 67.9
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.3e-132 477.2 365 73.2
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.2e-132 476.5 365 74.5
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.4e-131 473.8 317 82.6
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 5.3e-131 471.9 341 76.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.3e-131 471.9 399 69.7
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 9.0e-131 471.1 341 76.5
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.6e-130 469.5 362 73.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.4e-130 469.2 368 73.6
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 5.9e-130 468.4 342 76.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.9e-130 468.4 367 70.3
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.6e-130 468.0 346 72.5
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.6e-130 468.0 348 78.2
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 4.2e-128 462.2 374 67.6
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.6e-127 458.8 366 71.0
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 4.6e-127 458.8 366 71.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-126 456.8 346 76.0
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 5.1e-126 455.3 384 65.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 8.8e-126 454.5 344 72.1
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-125 454.1 344 76.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.1e-125 454.1 344 76.2
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.1e-125 454.1 350 70.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.3e-125 452.2 347 77.2
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 5.7e-125 451.8 344 75.0
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.4e-125 451.4 384 71.4
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 7.4e-125 451.4 352 70.7
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.3e-124 450.7 344 74.7
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.4e-123 446.4 354 70.1
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 9.1e-123 444.5 366 67.8
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.5e-122 442.2 382 62.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-120 437.6 358 67.6
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.1e-119 433.3 361 64.0
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.4e-117 424.9 362 71.5
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.7e-116 422.5 362 72.1
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.7e-116 422.5 369 69.1
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.2e-113 413.3 308 75.0
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 2.2e-113 413.3 292 83.2
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.0e-113 412.1 378 59.5
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.1e-109 401.0 318 72.3
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 2.0e-109 400.2 398 56.0
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.9e-106 388.7 326 64.4
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-104 384.4 367 58.0
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.2e-104 382.5 277 75.1
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-103 380.9 302 64.6
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.0e-102 377.9 267 76.0
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.5e-101 374.0 371 56.1
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 3.8e-97 359.4 367 59.7
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 8.5e-97 358.2 218 88.5
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.0e-94 351.3 293 71.0
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 4.0e-94 349.4 268 70.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.8e-91 340.5 270 70.7
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.2e-86 322.4 225 80.0
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-78 297.4 266 64.7
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 4.6e-66 256.1 181 76.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.4e-53 213.4 124 91.1
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.2e-44 184.1 130 77.7
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.4e-43 179.5 136 72.8
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.0e-41 175.3 150 68.7
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 9.9e-37 158.7 105 80.0
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 7.9e-34 149.1 122 68.0
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 4.0e-30 136.7 97 75.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.1e-26 124.4 82 70.7
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 6.0e-26 122.9 70 78.6
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 8.7e-25 119.0 70 77.1
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 5.8e-21 106.3 125 54.4
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.4e-20 102.4 78 57.7
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 1.3e-17 95.1 58 91.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.9e-17 93.6 81 65.4
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 7.4e-16 89.4 54 92.6
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 3.1e-14 84.0 81 59.3
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.9e-14 82.8 93 54.8
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.6e-13 80.9 94 50.0
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 5.0e-12 76.6 73 50.7
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 4.2e-11 73.6 42 85.7
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 2.1e-10 71.2 134 41.8
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 2.1e-10 71.2 57 73.7
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 8.8e-09 65.9 274 24.8
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 2.2e-07 61.2 38 89.5
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.8e-07 60.8 78 46.2


User provided reference genes

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