Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 0.0e+00 1550.8 782 100.0
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 5.7e-280 967.6 883 57.3
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 3.1e-278 961.8 784 62.1
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.1e-274 949.1 782 61.9
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.3e-271 939.9 782 62.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.7e-271 939.5 782 61.0
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.7e-271 939.5 782 62.9
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 3.5e-269 931.8 784 61.1
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 2.2e-268 929.1 783 60.8
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 7.2e-267 924.1 784 61.4
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 1.0e-265 920.2 779 60.7
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 6.8e-265 917.5 785 60.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 5.7e-264 914.4 783 61.6
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 5.7e-264 914.4 783 61.7
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.1e-262 910.2 783 59.9
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 2.4e-262 909.1 782 60.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 2.4e-262 909.1 783 59.4
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 5.4e-262 907.9 785 59.7
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 7.7e-261 904.0 786 58.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 1.0e-260 903.7 785 60.6
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 6.5e-260 901.0 784 59.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 8.6e-260 900.6 783 60.5
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 2.5e-259 899.0 782 58.8
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 3.3e-259 898.7 786 60.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.2e-259 898.3 780 60.6
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 9.5e-259 897.1 782 58.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.2e-258 896.7 803 59.5
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 3.6e-258 895.2 778 59.6
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.0e-257 893.6 793 59.9
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 8.9e-257 890.6 784 59.4
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 2.0e-256 889.4 782 57.4
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.0e-256 889.4 787 58.6
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 4.4e-256 888.3 786 58.7
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-255 886.7 788 59.0
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.3e-255 886.7 801 57.1
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 3.7e-255 885.2 782 58.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 8.3e-255 884.0 782 58.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.1e-254 883.6 782 58.3
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 2.7e-253 879.0 783 57.6
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 4.5e-253 878.2 786 57.9
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 2.3e-252 875.9 807 55.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 2.5e-251 872.5 783 58.6
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.3e-251 870.9 785 57.7
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.3e-249 865.9 784 59.1
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 2.3e-249 865.9 873 54.6
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.0e-249 865.5 778 57.6
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 3.7e-247 858.6 789 55.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.1e-246 857.1 782 57.2
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.4e-246 856.7 785 57.1
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.2e-246 855.5 783 58.2
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 2.0e-245 852.8 791 56.6
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.7e-245 852.4 782 57.2
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 6.0e-245 851.3 784 56.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.0e-244 850.5 754 58.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.7e-244 849.7 783 55.6
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.3e-244 849.4 886 52.7
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.3e-244 849.4 783 55.4
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 6.6e-244 847.8 786 58.0
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.5e-243 846.7 781 57.2
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.2e-242 843.6 778 55.9
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.6e-242 843.2 782 55.2
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.6e-242 843.2 842 54.3
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.8e-242 842.4 777 55.5
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 8.0e-242 840.9 784 56.1
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 8.0e-242 840.9 776 55.7
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.3e-241 839.3 784 56.0
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.1e-241 839.0 777 55.9
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 5.2e-241 838.2 777 55.6
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.0e-240 836.3 786 55.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 3.4e-240 835.5 798 54.1
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.4e-240 835.1 784 56.5
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.7e-239 833.2 786 54.8
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.2e-238 828.9 785 54.9
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 9.2e-238 827.4 782 54.9
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.2e-237 827.0 783 55.7
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 6.0e-237 824.7 789 57.0
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.3e-236 822.8 788 56.7
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 5.6e-235 818.1 779 54.7
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 6.8e-233 811.2 784 55.6
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 4.4e-232 808.5 803 53.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 4.6e-229 798.5 752 54.5
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 6.6e-228 794.7 745 56.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.9e-219 766.5 788 51.9
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 9.3e-214 747.7 726 55.4
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 3.9e-212 742.3 780 49.6
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.6e-210 736.9 778 52.4
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-200 703.7 785 49.7
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 7.9e-181 638.3 517 61.3
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.3e-178 630.9 780 47.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.7e-175 620.5 534 60.3
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 7.2e-174 615.1 811 44.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.2e-173 614.4 803 43.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.6e-173 612.8 482 65.4
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.0e-163 580.5 549 55.7
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-155 554.7 433 64.0
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.5e-134 484.6 600 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 7.3e-126 455.7 750 37.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.6e-120 438.0 830 33.3
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 5.2e-116 422.9 509 46.6
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-115 421.0 407 54.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.0e-104 382.9 509 46.4
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-91 341.7 447 45.9
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 6.7e-87 326.2 394 45.9
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 4.3e-86 323.6 452 42.9
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 9.6e-78 295.8 190 69.5
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 7.1e-73 279.6 384 43.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.3e-71 274.6 247 59.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.9e-71 273.9 379 42.2
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.4e-68 265.4 229 59.4
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 6.3e-61 240.0 267 48.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-56 224.6 182 63.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 2.8e-53 214.5 776 26.0
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 5.7e-38 163.7 489 25.8
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 3.7e-37 161.0 166 52.4
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 4.5e-35 154.1 225 41.3
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 8.5e-34 149.8 150 59.3
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.4e-31 142.5 106 62.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 4.0e-31 141.0 582 25.8
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 2.6e-30 138.3 505 23.8
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.7e-29 134.4 89 70.8
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.6e-27 129.0 109 55.0
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-26 125.9 256 34.4
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 5.0e-26 124.0 110 53.6
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.0e-23 116.3 99 58.6
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.9e-23 113.2 99 58.6
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.5e-22 112.5 86 60.5
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 4.4e-22 110.9 335 28.7
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.7e-21 107.8 99 56.6
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.7e-21 107.8 61 77.0
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.2e-20 104.8 83 63.9
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.0e-20 103.6 134 45.5
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 9.2e-20 103.2 61 72.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 3.5e-19 101.3 124 46.0
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 4.6e-19 100.9 61 72.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-18 99.0 85 58.8
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-18 99.0 116 47.4
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.3e-15 88.6 79 55.7
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 5.2e-15 87.4 61 65.6
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 7.5e-14 83.6 81 49.4
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 1.7e-13 82.4 78 47.4
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.4e-13 80.5 133 41.4
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.4e-12 79.3 61 57.4
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.9e-12 79.0 55 67.3
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 4.6e-11 74.3 117 42.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.9e-10 71.2 61 57.4
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.9e-10 71.2 61 57.4
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.5e-09 69.3 99 42.4
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.8e-08 65.1 61 54.1
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.6e-08 64.7 99 40.4
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.1e-08 63.5 69 49.3
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-07 62.8 68 50.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-06 58.9 57 56.1
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 5.8e-06 57.4 31 80.6
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 7.5e-06 57.0 31 80.6


User provided reference genes

Program Settings