Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 7.4e-96 354.8 330 100.0
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 7.2e-51 205.3 331 60.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.4e-46 191.0 335 60.9
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.4e-46 190.3 329 57.8
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 2.4e-46 190.3 321 65.4
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 4.1e-46 189.5 322 58.4
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.0e-46 188.7 329 56.8
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 9.1e-46 188.3 329 59.3
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 7.7e-45 185.3 327 59.0
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 7.7e-45 185.3 333 62.8
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 9.5e-43 178.3 326 59.2
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.1e-42 177.2 332 61.1
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.1e-42 177.2 333 57.4
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 8.0e-42 175.3 324 61.4
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.0e-41 174.9 331 61.6
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.3e-41 173.7 312 62.2
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 8.9e-41 171.8 333 57.1
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.2e-40 171.4 321 69.5
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.5e-40 171.0 329 57.4
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.0e-40 170.6 329 57.4
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.0e-40 170.6 325 52.3
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.6e-40 170.2 325 63.4
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.6e-40 170.2 325 63.4
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.4e-40 169.9 329 56.8
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.2e-39 167.2 325 55.4
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 6.3e-39 165.6 333 56.8
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 4.1e-38 162.9 339 54.3
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 9.2e-38 161.8 257 72.0
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 9.2e-38 161.8 330 63.6
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 2.0e-37 160.6 327 61.2
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.7e-37 160.2 330 45.5
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 2.7e-37 160.2 334 52.1
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-36 157.9 315 55.9
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.9e-36 156.4 329 57.8
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.1e-35 154.8 330 55.8
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.5e-35 154.5 318 71.4
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.9e-35 154.1 329 54.7
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.5e-35 153.7 329 48.9
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 4.3e-35 152.9 347 57.1
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 5.6e-35 152.5 321 55.8
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 5.6e-35 152.5 255 64.3
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.6e-34 151.0 325 56.6
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.1e-34 150.6 337 56.7
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 2.8e-34 150.2 325 62.5
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 3.6e-34 149.8 204 70.1
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.6e-34 149.8 338 59.2
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 3.6e-34 149.8 321 54.8
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 4.7e-34 149.4 335 57.0
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 4.7e-34 149.4 334 64.4
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 6.2e-34 149.1 322 60.2
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.0e-33 148.3 332 41.3
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.0e-33 148.3 348 56.3
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.0e-33 148.3 321 60.1
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.4e-33 147.9 318 56.0
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.8e-33 147.5 336 58.6
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.8e-33 147.5 315 68.6
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 4.0e-33 146.4 325 55.4
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 4.0e-33 146.4 324 62.3
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 4.0e-33 146.4 315 68.3
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.2e-33 146.0 324 57.7
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 6.8e-33 145.6 334 53.6
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 6.8e-33 145.6 330 54.5
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.8e-33 145.6 325 55.4
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 6.8e-33 145.6 311 62.4
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 8.9e-33 145.2 325 55.4
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.2e-32 144.8 321 57.6
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.0e-32 144.1 325 54.8
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 2.0e-32 144.1 336 56.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 3.4e-32 143.3 329 54.7
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 4.4e-32 142.9 325 55.1
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 4.4e-32 142.9 325 55.1
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 4.4e-32 142.9 325 55.1
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 4.4e-32 142.9 325 55.1
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 4.4e-32 142.9 207 63.3
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 4.4e-32 142.9 207 63.3
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 4.4e-32 142.9 336 68.2
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 4.4e-32 142.9 336 68.2
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 4.4e-32 142.9 336 68.2
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 7.5e-32 142.1 328 58.2
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 7.5e-32 142.1 330 44.2
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 9.8e-32 141.7 324 57.7
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 1.3e-31 141.4 339 58.1
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.9e-31 140.2 324 53.7
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 3.7e-31 139.8 324 60.8
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 3.7e-31 139.8 324 60.8
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.7e-31 139.8 333 58.0
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 4.9e-31 139.4 264 62.9
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 4.9e-31 139.4 264 62.9
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.9e-31 139.4 330 65.8
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 4.9e-31 139.4 207 62.8
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 4.9e-31 139.4 335 52.2
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 6.4e-31 139.0 329 59.3
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 8.3e-31 138.7 324 54.3
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.1e-30 138.3 340 51.8
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 1.9e-30 137.5 253 67.6
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.9e-30 137.5 325 53.5
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.9e-30 137.5 321 58.3
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 2.4e-30 137.1 320 57.2
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 7.0e-30 135.6 211 54.5
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 9.2e-30 135.2 320 55.0
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-29 134.8 321 57.6
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 1.2e-29 134.8 330 57.6
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.7e-29 133.7 339 54.6
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.7e-29 133.7 346 53.8
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.5e-29 133.3 261 55.9
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 3.5e-29 133.3 326 54.0
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.5e-29 133.3 304 54.9
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 4.6e-29 132.9 208 58.7
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 6.0e-29 132.5 329 54.7
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.3e-28 131.3 336 57.4
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 2.3e-28 130.6 336 53.0
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.9e-28 129.8 339 49.3
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 5.0e-28 129.4 316 66.5
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 8.6e-28 128.6 324 58.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 8.6e-28 128.6 319 59.9
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.5e-27 127.9 195 63.1
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.5e-27 127.1 316 62.3
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 2.5e-27 127.1 342 55.0
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.3e-27 126.7 336 55.4
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.3e-27 126.3 305 59.0
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.3e-27 126.3 321 62.0
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 7.3e-27 125.6 258 60.5
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 9.5e-27 125.2 188 48.4
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 1.2e-26 124.8 258 60.5
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.2e-26 124.8 330 54.2
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.6e-26 124.4 324 58.3
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.6e-26 124.4 342 45.0
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.6e-26 124.4 314 52.2
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.6e-26 124.4 332 56.6
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.1e-26 124.0 327 52.0
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 3.6e-26 123.2 315 61.9
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 3.6e-26 123.2 316 58.9
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 6.2e-26 122.5 323 52.6
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.4e-25 121.3 274 59.1
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 3.1e-25 120.2 334 60.8
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 3.1e-25 120.2 207 54.6
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 3.1e-25 120.2 329 54.1
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 3.1e-25 120.2 333 43.8
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 1.2e-24 118.2 333 48.3
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.5e-24 117.9 325 56.6
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.4e-24 116.7 324 59.6
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 3.4e-24 116.7 319 50.5
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 4.4e-24 116.3 325 61.8
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 5.8e-24 115.9 268 51.5
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 5.8e-24 115.9 323 56.0
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 7.5e-24 115.5 264 64.4
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 7.5e-24 115.5 214 50.5
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.3e-23 114.8 306 66.0
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.2e-23 114.0 216 53.7
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.4e-22 111.3 264 65.5
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.4e-22 111.3 314 57.3
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.9e-22 110.9 323 54.8
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 2.4e-22 110.5 318 54.1
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.1e-22 109.8 323 54.8
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 7.1e-22 109.0 264 64.4
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 7.1e-22 109.0 264 63.6
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 7.1e-22 109.0 264 64.4
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 9.2e-22 108.6 326 60.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.7e-21 107.1 161 52.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.7e-21 107.1 253 64.8
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.7e-21 107.1 328 52.1
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 2.7e-21 107.1 159 57.9
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.5e-21 106.7 254 64.6
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 4.6e-21 106.3 323 54.2
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 7.8e-21 105.5 264 64.0
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.3e-20 104.8 94 54.3
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.3e-20 104.8 165 55.2
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.7e-20 104.4 253 62.8
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.5e-19 101.3 306 54.2
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 5.6e-19 99.4 318 56.6
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 9.5e-19 98.6 212 46.7
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.6e-18 97.8 324 61.7
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 6.2e-18 95.9 324 57.7
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-17 94.7 324 57.4
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-17 94.0 318 54.7
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 5.8e-16 89.4 332 55.7
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.7e-15 87.8 81 55.6
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 4.1e-14 83.2 240 45.4
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-12 78.2 258 60.5
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 5.1e-12 76.3 209 49.8
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 6.6e-12 75.9 251 54.6
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.1e-11 75.1 326 61.3
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 9.6e-11 72.0 167 85.0
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 9.9e-08 62.0 114 51.8
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 9.9e-08 62.0 204 46.1
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 6.4e-07 59.3 258 53.1


User provided reference genes

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