Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.1e-107 393.3 190 100.0
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.3e-94 349.0 190 87.4
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 2.3e-94 349.0 190 86.8
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 5.2e-94 347.8 189 86.8
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 5.2e-94 347.8 190 86.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 5.2e-94 347.8 190 86.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.9e-94 347.1 190 86.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.5e-93 346.3 190 86.3
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.5e-93 346.3 190 85.8
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.6e-93 345.5 190 85.3
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.4e-93 345.1 190 85.3
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 5.7e-93 344.4 190 85.3
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 5.7e-93 344.4 190 84.2
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 9.8e-93 343.6 190 85.3
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.3e-92 343.2 190 84.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.9e-92 342.0 190 83.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.9e-92 342.0 189 85.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-92 342.0 190 83.7
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 6.3e-92 340.9 190 84.2
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.1e-91 340.1 190 83.7
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-91 340.1 190 83.7
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 84.7
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 83.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 83.7
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 85.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 84.7
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.4e-91 339.7 190 83.2
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 2.4e-91 339.0 190 83.7
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.4e-91 339.0 190 83.2
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.2e-91 338.6 190 84.7
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 4.1e-91 338.2 190 84.7
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 5.4e-91 337.8 190 82.1
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 5.4e-91 337.8 190 83.2
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 5.4e-91 337.8 190 83.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 7.0e-91 337.4 189 84.1
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.0e-91 337.4 189 84.1
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 7.0e-91 337.4 190 83.2
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 9.2e-91 337.0 190 83.2
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.2e-90 336.7 190 83.7
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.2e-90 336.7 190 83.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.6e-90 336.3 190 83.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-90 335.9 189 83.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.0e-90 335.9 189 83.6
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.0e-90 335.9 190 82.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-90 335.9 190 81.6
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.7e-90 335.5 190 82.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 5.9e-90 334.3 190 82.6
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 5.9e-90 334.3 190 82.6
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 7.8e-90 334.0 190 82.6
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 7.8e-90 334.0 190 83.2
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 7.8e-90 334.0 190 81.6
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 7.8e-90 334.0 190 82.1
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.0e-89 333.6 190 82.6
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.0e-89 333.6 190 83.7
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.0e-89 333.6 190 83.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.3e-89 333.2 190 82.6
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.9e-89 332.0 190 83.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 3.9e-89 331.6 190 82.1
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 8.6e-89 330.5 190 83.2
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.1e-88 330.1 190 80.5
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.5e-88 329.7 190 81.6
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.9e-88 329.3 190 81.1
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 4.3e-88 328.2 189 81.5
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 7.3e-88 327.4 190 82.1
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 9.5e-88 327.0 190 81.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.6e-87 326.2 190 81.6
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.6e-87 326.2 190 81.6
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.1e-87 325.9 189 80.4
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 3.6e-87 325.1 190 80.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 3.6e-87 325.1 189 79.9
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 4.7e-87 324.7 190 80.0
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 6.1e-87 324.3 190 80.5
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 6.1e-87 324.3 190 80.0
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 8.0e-87 323.9 190 80.0
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.0e-86 323.6 190 80.0
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.4e-86 323.2 189 79.9
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.8e-86 322.8 190 79.5
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.3e-86 322.4 190 80.5
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.3e-86 322.4 190 78.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 4.0e-86 321.6 189 79.4
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 5.2e-86 321.2 190 77.9
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 6.8e-86 320.9 190 78.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.8e-86 320.9 190 78.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.5e-85 319.7 190 77.9
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.0e-85 319.3 190 80.0
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.4e-85 318.5 190 78.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 7.5e-85 317.4 190 78.9
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 2.9e-84 315.5 190 77.9
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.1e-83 313.5 189 77.8
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 2.4e-83 312.4 190 75.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.2e-83 310.5 190 76.8
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.2e-82 310.1 190 75.8
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-82 309.7 190 75.8
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 3.5e-82 308.5 190 75.8
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 4.6e-82 308.1 190 75.3
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 4.6e-82 308.1 190 74.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 8.6e-81 303.9 190 74.7
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.9e-80 302.8 190 73.2
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.5e-80 302.4 190 72.1
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.3e-80 302.0 190 73.2
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 8.1e-79 297.4 189 72.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 4.0e-78 295.0 189 70.4
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.7e-76 289.7 190 74.2
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 5.4e-75 284.6 190 69.5
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.7e-73 279.6 189 67.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.9e-72 276.2 185 68.6
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 3.7e-68 261.9 154 82.5
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.4e-67 258.1 152 82.9
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 8.6e-65 250.8 152 80.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 8.1e-63 244.2 192 60.9
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.0e-62 241.9 190 62.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.2e-61 240.4 191 60.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.2e-61 240.4 189 64.0
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.5e-61 240.0 186 61.3
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.0e-54 215.3 152 69.7
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.6e-53 212.6 123 83.7
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.9e-52 209.1 251 48.6
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.3e-49 200.3 108 87.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.5e-48 196.8 156 58.3
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.3e-47 193.7 115 81.7
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.2e-36 156.4 136 61.8
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.1e-32 144.1 85 75.3
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.3e-23 114.0 65 83.1
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.1e-22 109.4 65 78.5
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.5e-19 99.8 206 34.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.8e-15 86.3 46 84.8
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 5.9e-13 78.6 103 47.6


User provided reference genes

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