Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 4.7e-205 717.6 360 100.0
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.5e-179 632.9 344 90.7
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 3.5e-176 621.7 344 88.1
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 7.9e-176 620.5 344 89.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 3.9e-175 618.2 344 88.1
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.9e-174 615.9 344 88.7
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.9e-174 615.9 344 88.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.3e-174 615.1 344 88.4
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 5.6e-174 614.4 343 87.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.3e-173 613.2 344 87.8
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.8e-173 612.1 344 87.5
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.8e-173 612.1 344 88.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 6.2e-173 610.9 344 88.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 6.2e-173 610.9 344 86.3
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.2e-173 610.9 341 89.4
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 8.1e-173 610.5 338 88.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.1e-172 610.1 344 86.9
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.4e-172 609.0 343 88.0
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 3.1e-172 608.6 344 88.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.1e-172 608.6 344 87.5
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 4.0e-172 608.2 344 86.3
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.3e-172 607.8 337 88.7
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 6.9e-172 607.4 344 85.5
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 9.0e-172 607.1 338 89.3
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.0e-172 607.1 338 88.8
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.5e-171 606.3 342 86.5
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 2.0e-171 605.9 338 88.5
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 2.0e-171 605.9 344 86.6
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.5e-171 604.7 338 88.2
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.3e-170 603.2 343 86.3
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.2e-170 602.4 338 87.0
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 2.2e-170 602.4 344 85.2
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 3.8e-170 601.7 338 87.3
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 4.9e-170 601.3 338 88.2
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.4e-170 600.9 338 86.7
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 1.1e-169 600.1 344 86.6
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.4e-169 599.7 356 83.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.5e-169 599.0 342 85.1
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.5e-169 599.0 338 87.6
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.2e-169 598.6 338 87.3
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.2e-169 598.6 338 87.3
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 4.2e-169 598.2 341 85.3
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.2e-169 598.2 338 86.4
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 5.5e-169 597.8 342 86.5
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.6e-168 596.3 338 86.4
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.5e-168 595.1 338 84.9
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 6.0e-168 594.3 338 87.0
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.0e-167 593.6 343 85.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.0e-167 593.6 343 85.7
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.3e-167 593.2 338 86.1
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.8e-167 592.8 338 86.1
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 2.3e-167 592.4 343 85.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 5.1e-167 591.3 338 86.4
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.1e-167 591.3 338 86.4
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 8.7e-167 590.5 344 84.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.9e-166 589.3 340 84.4
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.3e-166 588.6 338 85.8
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 4.3e-166 588.2 340 86.8
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.3e-166 588.2 338 85.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.3e-166 588.2 338 85.8
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.3e-165 586.6 343 84.8
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.3e-165 586.6 342 84.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.6e-165 586.3 338 84.9
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.7e-165 585.1 342 82.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.7e-165 585.1 335 85.4
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.1e-164 583.6 338 84.3
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.2e-163 580.1 342 83.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 7.6e-163 577.4 338 83.7
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.3e-162 576.6 342 83.9
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 2.9e-162 575.5 339 84.4
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 3.8e-162 575.1 338 83.4
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.1e-161 573.5 342 83.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.9e-161 572.8 342 82.7
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.9e-161 572.8 338 83.7
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.5e-161 572.4 338 83.7
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 7.1e-161 570.9 343 82.2
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 9.3e-161 570.5 338 83.4
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 9.3e-161 570.5 338 83.4
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 9.3e-161 570.5 338 83.4
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 9.3e-161 570.5 338 83.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 2.7e-160 568.9 334 84.1
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 7.9e-160 567.4 330 84.5
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.0e-159 567.0 338 83.1
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 6.7e-159 564.3 343 81.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 9.7e-158 560.5 342 81.3
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-157 559.3 342 81.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 2.2e-157 559.3 342 81.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.2e-157 559.3 342 81.0
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.8e-157 558.9 343 81.3
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 8.2e-157 557.4 338 81.4
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.2e-154 549.3 441 65.3
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.4e-153 546.6 314 86.3
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.2e-152 543.5 338 78.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.7e-152 542.3 338 81.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-150 537.0 318 84.6
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 5.7e-150 534.6 310 85.8
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.8e-149 532.3 344 75.6
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.4e-148 530.0 343 75.5
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.3e-148 528.1 343 75.2
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.9e-148 527.7 327 78.6
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 5.9e-147 524.6 333 80.2
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 5.0e-146 521.5 307 83.7
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 9.4e-145 517.3 344 77.6
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 6.1e-144 514.6 338 76.9
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.1e-144 514.6 353 72.2
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.5e-142 510.0 314 78.7
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 6.3e-141 504.6 413 65.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 7.7e-139 497.7 282 86.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.4e-135 486.9 343 69.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.7e-134 481.5 342 70.5
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 4.1e-132 475.3 259 91.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.4e-126 455.3 343 70.6
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.5e-123 445.7 251 87.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.5e-121 438.3 251 86.9
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 5.2e-119 431.8 245 88.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.5e-118 430.3 247 85.0
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 6.3e-117 424.9 236 86.9
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.0e-110 403.3 252 79.8
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 3.5e-99 365.9 207 87.9
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.6e-81 305.4 162 90.1
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 2.8e-80 303.1 161 91.3
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.9e-77 292.4 335 46.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 2.4e-76 290.0 330 46.1
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 6.0e-75 285.4 184 78.3
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-60 238.0 143 81.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.5e-60 235.7 132 84.8
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 7.1e-60 235.3 334 37.7
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 3.7e-56 223.0 338 45.9
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 6.5e-53 212.2 120 82.5
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 5.7e-49 199.1 379 36.9
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.7e-45 187.6 109 83.5
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.7e-37 161.0 109 76.1
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.9e-30 136.0 128 57.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 7.7e-30 135.6 101 66.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 7.7e-30 135.6 84 76.2
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 6.5e-29 132.5 79 82.3
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 9.4e-28 128.6 79 82.3
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 9.4e-28 128.6 109 63.3
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.0e-26 125.2 70 85.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.4e-25 119.8 67 85.1
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.7e-24 117.9 75 76.0
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.7e-24 117.9 75 76.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.7e-24 117.9 75 76.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 4.8e-24 116.3 75 73.3
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 4.8e-24 116.3 75 73.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 1.4e-23 114.8 125 45.6
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.8e-23 114.4 75 72.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 3.2e-20 103.6 64 81.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.6e-14 84.7 54 83.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 2.9e-13 80.5 55 78.2
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-11 75.1 82 50.0
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.4e-09 66.6 36 86.1
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 7.5e-09 65.9 74 48.6
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.2e-08 64.3 35 85.7
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.7e-08 63.5 35 82.9
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 6.3e-08 62.8 37 75.7
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 4.1e-07 60.1 38 65.8


User provided reference genes

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