Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G203 Amborella trichopoda HOM05D006902 ORTHO05D008468 1.8e-97 359.4 197 100.0
Nn8g40519 Nelumbo nucifera HOM05D006902 ORTHO05D008468 7.4e-27 124.8 178 47.8
Rhsim02G0120100 Rhododendron simsii HOM05D006902 ORTHO05D008468 1.3e-26 124.0 196 47.4
Potri.004G035200 Populus trichocarpa HOM05D006902 ORTHO05D008468 4.1e-25 119.0 169 49.1
Sed0006938 Sechium edule HOM05D006902 ORTHO05D008468 1.5e-24 117.1 177 46.3
PGSC0003DMG402010824 Solanum tuberosum HOM05D006902 ORTHO05D008468 2.0e-24 116.7 159 50.9
CsaV3_4G028920 Cucumis sativus L. HOM05D006902 ORTHO05D008468 4.5e-24 115.5 180 46.7
Sopen10g004990 Solanum pennellii HOM05D006902 ORTHO05D008468 1.0e-23 114.4 158 49.4
Potri.011G043400 Populus trichocarpa HOM05D006902 ORTHO05D008468 2.9e-23 112.8 173 48.6
Dinv40499 Davidia involucrata HOM05D006902 ORTHO05D008468 5.0e-23 112.1 178 47.8
MD10G1302800 Malus domestica HOM05D006902 ORTHO05D008468 8.5e-23 111.3 192 44.8
Sabra11G0030000 Salix brachista HOM05D006902 ORTHO05D008468 1.1e-22 110.9 175 46.9
Actinidia24062 Actinidia chinensis HOM05D006902 ORTHO05D008468 1.4e-22 110.5 204 45.6
Atru.chr10.2001 Acer truncatum HOM05D006902 ORTHO05D008468 1.9e-22 110.2 201 44.3
PSO063G2673 Papaver somniferum HOM05D006902 ORTHO05D008468 9.4e-22 107.8 200 45.0
FvH4_3g04070 Fragaria vesca HOM05D006902 ORTHO05D008468 3.6e-21 105.9 195 44.1
PSO782G4966 Papaver somniferum HOM05D006902 ORTHO05D008468 6.1e-21 105.1 198 42.9
ClCG04G003630 Citrullus lanatus HOM05D006902 ORTHO05D008468 4.4e-19 99.0 193 41.5
Gohir.D05G168200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 4.4e-19 99.0 180 43.9
Oeu038228.1 Olea europaea HOM05D006902 ORTHO05D008468 9.7e-19 97.8 179 41.9
Hma1.2p1_0144F.1_g064740 Hydrangea macrophylla HOM05D006902 ORTHO05D008468 1.7e-18 97.1 198 41.4
FAN28G0433 Fragaria x ananassa HOM05D006902 ORTHO05D008468 2.2e-18 96.7 180 43.9
Gohir.A05G165200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 2.2e-18 96.7 182 44.0
CANSAT56G2140 Cannabis sativa HOM05D006902 ORTHO05D008468 6.3e-18 95.1 205 42.9
Manes.16G021000 Manihot esculenta HOM05D006902 ORTHO05D008468 8.2e-18 94.7 197 41.1
RcHm_v2.0_Chr5g0006551 Rosa chinensis HOM05D006902 ORTHO05D008468 1.1e-17 94.4 202 42.6
Gorai.009G173300 Gossypium raimondii HOM05D006902 ORTHO05D008468 1.8e-17 93.6 182 43.4
Prupe.4G036300 Prunus persica HOM05D006902 ORTHO05D008468 1.8e-17 93.6 196 39.8
DCAR_008067 Daucus carota HOM05D006902 ORTHO05D008468 2.4e-17 93.2 182 41.2
QL03p053069 Quercus lobata HOM05D006902 ORTHO05D008468 2.4e-17 93.2 171 42.1
Eucgr.D00710 Eucalyptus grandis HOM05D006902 ORTHO05D008468 5.3e-17 92.0 172 40.7
Duzib235G0611 Durio zibethinus HOM05D000306 ORTHO05D000410 7.0e-17 91.7 168 40.5
TWI38G1087 Tripterygium wilfordii HOM05D006902 ORTHO05D008468 9.1e-17 91.3 173 42.2
FvH4_1g04320 Fragaria vesca HOM05D006902 ORTHO05D008468 1.2e-16 90.9 183 43.2
Eucgr.L03594 Eucalyptus grandis HOM05D006902 ORTHO05D008468 2.6e-16 89.7 172 40.1
vmacro15868 Vaccinium macrocarpon HOM05D006902 ORTHO05D008468 1.7e-15 87.0 247 33.6
Aqoxy7G03119 Aquilegia oxysepala HOM05D006902 ORTHO05D008468 1.5e-14 84.0 180 39.4
Ciclev10016776m.g Citrus clementina HOM05D006902 ORTHO05D008468 1.9e-14 83.6 175 41.1
HanXRQChr17g0551071 Helianthus annuus HOM05D006902 ORTHO05D008468 5.5e-14 82.0 175 38.3
Lsat_1_v5_gn_4_57121 Lactuca sativa HOM05D006902 ORTHO05D008468 5.5e-14 82.0 209 36.8
Medtr4g090910 Medicago truncatula HOM05D006902 ORTHO05D008468 5.5e-14 82.0 200 38.5
Thecc.06G198400 Theobroma cacao HOM05D006902 ORTHO05D008468 5.5e-14 82.0 201 37.8
TPR.G32415 Trifolium pratense HOM05D006902 ORTHO05D008468 3.6e-13 79.3 198 37.9
THA.LOC104809549 Tarenaya hassleriana HOM05D006902 ORTHO05D008468 5.2e-12 75.5 199 36.2
Lalb_Chr16g0383411 Lupinus albus HOM05D006902 ORTHO05D008468 6.7e-12 75.1 181 39.2
FAN11G0740 Fragaria x ananassa HOM05D000306 ORTHO05D000410 8.8e-12 74.7 104 48.1
Pp3c20_8900 Physcomitrium patens HOM05D006902 ORTHO05D008468 8.8e-12 74.7 215 34.9
CiPaw.09G158500 Carya illinoinensis HOM05D006902 ORTHO05D008468 1.1e-11 74.3 173 38.7
MSTRG.14679 Avicennia marina HOM05D006902 ORTHO05D008468 1.5e-11 73.9 195 34.9
SalBow7G0974 Salvia bowleyana HOM05D006902 ORTHO05D008468 1.5e-11 73.9 130 39.2
Migut.H01513 Erythranthe guttata HOM05D006902 ORTHO05D008468 2.6e-11 73.2 183 37.2
Sc05g0008060 Simmondsia chinensis HOM05D006902 ORTHO05D008468 4.4e-11 72.4 210 35.2
Sc05g0010000 Simmondsia chinensis HOM05D006902 ORTHO05D008468 4.4e-11 72.4 210 35.2
SEGI_26187 Sequoiadendron giganteum HOM05D006902 ORTHO05D008468 7.4e-11 71.6 172 37.8
arahy.Tifrunner.gnm1.ann1.EL94R1 Arachis hypogaea HOM05D006902 ORTHO05D008468 9.7e-11 71.2 170 36.5
arahy.Tifrunner.gnm1.ann1.G41NRI Arachis hypogaea HOM05D006902 ORTHO05D008468 2.8e-10 69.7 170 35.9
Glyma.07G190800 Glycine max HOM05D006902 ORTHO05D008468 2.8e-10 69.7 157 38.2
Os03g0353500 Oryza sativa ssp. japonica HOM05D006902 ORTHO05D008468 2.8e-10 69.7 209 37.3
Lj4g0003242 Lotus japonicus HOM05D006902 ORTHO05D008468 3.7e-10 69.3 204 37.7
MD05G1325000 Malus domestica HOM05D006902 ORTHO05D008468 4.8e-10 68.9 71 56.3
ECA234G0685 Erigeron canadensis HOM05D006902 ORTHO05D008468 8.2e-10 68.2 139 38.1
FAN25G0692 Fragaria x ananassa HOM05D006902 ORTHO05D008468 8.2e-10 68.2 146 41.1
VMungo0251G2276 Vigna mungo HOM05D006902 ORTHO05D008468 8.2e-10 68.2 159 39.6
HPP92_006711 Vanilla planifolia HOM05D006902 ORTHO05D008468 1.8e-09 67.0 210 34.3
Ca_18489_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 2.4e-09 66.6 182 35.7
Ca_29542_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 2.4e-09 66.6 182 35.7
AT1G11240 Arabidopsis thaliana HOM05D006902 ORTHO05D008468 3.1e-09 66.2 175 37.1
Glyma.08G058500 Glycine max HOM05D006902 ORTHO05D008468 4.1e-09 65.9 159 38.4
Psat7g109600 Pisum sativum HOM05D006902 ORTHO05D008468 7.0e-09 65.1 199 34.2
Peaxi162Scf00371g01024 Petunia axillaris HOM05D006902 ORTHO05D008468 1.2e-08 64.3 160 38.8
SGA_v2.0_scaffold159G37666 Striga asiatica HOM05D006902 ORTHO05D008468 1.6e-08 63.9 126 38.9
Sp1g09900 Schrenkiella parvula HOM05D006902 ORTHO05D008468 2.6e-08 63.2 175 34.9
Zm00001eb394590 Zea mays HOM05D006902 ORTHO05D008468 2.6e-08 63.2 203 37.9
QL05p081948 Quercus lobata HOM05D006902 ORTHO05D008468 3.5e-08 62.8 171 33.9
Carub.0001s1082 Capsella rubella HOM05D006902 ORTHO05D008468 4.5e-08 62.4 177 37.9
unitig_8.g3353 Utricularia gibba HOM05D006902 ORTHO05D008468 7.7e-08 61.6 95 41.1
AL1G22260 Arabidopsis lyrata HOM05D006902 ORTHO05D008468 1.0e-07 61.2 175 35.4
Phvul.002G222700 Phaseolus vulgaris HOM05D006902 ORTHO05D008468 1.0e-07 61.2 159 37.7
Aa31LG1G3550 Aethionema arabicum HOM05D006902 ORTHO05D008468 1.3e-07 60.8 178 34.8
AUR62014725 Chenopodium quinoa HOM05D006902 ORTHO05D008468 6.5e-07 58.5 198 33.8
AUR62016906 Chenopodium quinoa HOM05D006902 ORTHO05D008468 1.5e-06 57.4 211 33.6
Sabra04G0021000 Salix brachista HOM05D006902 ORTHO05D008468 1.5e-06 57.4 157 37.6
Nitab4.5_0003223g0030 Nicotiana tabacum HOM05D006902 ORTHO05D008468 2.5e-06 56.6 172 32.6
EL10Ac8g20614 Beta vulgaris HOM05D006902 ORTHO05D008468 3.2e-06 56.2 196 34.2
COL.COLO4_31574 Corchorus olitorius HOM05D000306 ORTHO05D000410 4.2e-06 55.8 151 32.5
Cpa.g.c36644 Carica papaya HOM05D006902 ORTHO05D008468 5.5e-06 55.5 75 48.0
Thhalv10008794m.g Eutrema salsugineum HOM05D006902 ORTHO05D008468 5.5e-06 55.5 175 32.6
Ah.14g088940 Amaranthus hybridus HOM05D006902 ORTHO05D008468 9.4e-06 54.7 187 33.2


User provided reference genes

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