Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 8.5e-81 303.5 144 100.0
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.0e-57 226.9 144 68.8
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 5.0e-57 224.6 142 71.8
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.1e-56 223.4 144 69.4
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.5e-56 222.2 144 68.1
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 3.3e-56 221.9 144 66.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 5.6e-56 221.1 144 65.3
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 5.6e-56 221.1 144 66.0
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 5.6e-56 221.1 144 66.0
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 9.5e-56 220.3 144 66.0
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.1e-55 219.2 144 65.3
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 2.1e-55 219.2 144 67.4
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.8e-55 218.8 144 63.2
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 3.6e-55 218.4 144 67.4
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.6e-55 218.4 144 66.0
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 8.0e-55 217.2 144 66.7
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.0e-54 216.9 144 67.4
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.0e-54 216.9 144 65.3
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.4e-54 216.5 144 63.2
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.4e-54 216.5 144 65.3
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.4e-54 216.5 144 65.3
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 1.4e-54 216.5 144 65.3
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.8e-54 216.1 144 66.0
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.3e-54 215.7 144 68.1
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.0e-54 215.3 143 67.1
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 3.0e-54 215.3 144 64.6
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 3.0e-54 215.3 144 64.6
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.0e-54 214.9 144 68.8
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 8.9e-54 213.8 142 64.8
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 8.9e-54 213.8 144 64.6
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.2e-53 213.4 144 63.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.2e-53 213.4 144 67.4
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.5e-53 213.0 144 64.6
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.0e-53 212.6 144 63.2
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.0e-53 212.6 144 63.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 2.6e-53 212.2 141 64.5
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.6e-53 212.2 144 62.5
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.6e-53 212.2 144 63.2
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.6e-53 212.2 144 63.9
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.4e-53 211.8 144 64.6
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 4.4e-53 211.5 144 63.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.4e-53 211.5 144 63.9
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.4e-53 211.5 144 63.9
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.4e-53 211.5 144 65.3
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 5.8e-53 211.1 144 62.5
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.8e-53 211.1 144 65.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 5.8e-53 211.1 144 63.9
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 5.8e-53 211.1 144 63.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 7.5e-53 210.7 144 63.9
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 7.5e-53 210.7 144 64.6
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 9.8e-53 210.3 144 64.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.3e-52 209.9 144 64.6
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.3e-52 209.9 144 63.9
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.2e-52 209.1 144 62.5
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.2e-52 209.1 144 62.5
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 2.2e-52 209.1 143 64.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 2.2e-52 209.1 144 61.8
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.2e-52 209.1 144 63.9
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.9e-52 208.8 144 63.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 3.7e-52 208.4 144 63.9
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.7e-52 208.4 142 66.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 3.7e-52 208.4 144 63.9
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 4.9e-52 208.0 144 63.9
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 8.3e-52 207.2 144 61.8
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.3e-52 207.2 144 61.8
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-51 206.8 144 63.9
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.8e-51 206.1 144 62.5
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.8e-51 206.1 144 63.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.4e-51 205.7 143 61.5
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.4e-51 205.7 142 65.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.4e-51 205.7 142 65.5
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 4.1e-51 204.9 144 61.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 4.1e-51 204.9 144 60.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 4.1e-51 204.9 144 62.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 7.0e-51 204.1 144 64.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 7.0e-51 204.1 144 60.4
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 7.0e-51 204.1 144 63.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 7.0e-51 204.1 143 61.5
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 9.2e-51 203.8 144 59.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 9.2e-51 203.8 142 62.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 9.2e-51 203.8 144 58.3
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.6e-50 203.0 144 60.4
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.0e-50 202.6 144 61.8
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.7e-50 202.2 144 63.9
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.7e-50 202.2 144 62.5
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.5e-50 201.8 144 60.4
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 3.5e-50 201.8 144 62.5
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 7.8e-50 200.7 144 61.8
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.7e-49 199.5 144 59.0
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.3e-49 199.1 144 59.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.0e-49 198.7 144 59.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 3.9e-49 198.4 144 56.9
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.9e-49 198.4 144 61.8
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 5.0e-49 198.0 142 64.8
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 6.6e-49 197.6 144 56.9
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 6.6e-49 197.6 144 61.1
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 8.6e-49 197.2 144 57.6
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 8.6e-49 197.2 144 61.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 8.6e-49 197.2 144 62.5
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.1e-48 196.8 144 62.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.5e-48 196.4 144 63.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 3.3e-48 195.3 144 56.9
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.3e-48 195.3 144 57.6
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 4.3e-48 194.9 144 58.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 4.3e-48 194.9 144 61.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 5.6e-48 194.5 144 59.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.3e-48 194.1 144 57.6
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 7.3e-48 194.1 142 57.0
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 9.5e-48 193.7 144 56.2
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.2e-47 193.4 144 56.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.2e-47 193.4 144 59.0
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.6e-47 193.0 144 63.2
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.1e-47 192.6 144 59.0
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.1e-47 192.6 144 60.4
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.8e-47 192.2 144 56.2
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 2.8e-47 192.2 141 61.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 3.6e-47 191.8 142 60.6
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 6.2e-47 191.0 144 57.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.1e-46 190.3 138 58.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 1.1e-46 190.3 144 58.3
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.4e-46 189.9 142 59.2
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.0e-45 186.0 144 56.9
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.9e-43 179.5 115 65.2
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.2e-43 178.7 141 55.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 3.5e-42 175.3 115 66.1
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 3.5e-42 175.3 144 53.5
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.9e-41 171.8 124 56.5
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.5e-40 169.9 114 64.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.6e-39 166.4 140 52.9
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 4.4e-37 158.3 112 58.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.3e-36 156.8 110 61.8
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 4.6e-34 148.3 97 63.9
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.0e-33 145.6 102 60.8
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 6.6e-33 144.4 147 48.3
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.4e-30 136.7 121 54.5
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 4.9e-28 128.3 139 46.8
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.4e-27 126.7 144 42.4
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.2e-26 123.6 72 76.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 6.0e-26 121.3 147 44.2
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 7.3e-24 114.4 141 39.7
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 7.6e-21 104.4 70 64.3
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.3e-20 103.6 68 63.2
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.2e-18 97.1 106 45.3
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.6e-18 96.7 120 43.3
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.3e-16 89.0 63 61.9
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.3e-16 88.6 70 50.0
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.8e-12 75.5 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.1e-11 73.9 72 44.4
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.8e-09 66.6 69 43.5


User provided reference genes

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