Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.6e-92 342.0 174 100.0
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 78.2
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 77.0
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 76.4
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 77.6
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 76.4
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 77.0
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 76.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 76.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 76.4
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 75.3
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.7
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.7
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 75.9
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 74.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 74.1
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 75.9
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 76.4
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 74.7
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.7
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 73.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 75.3
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.7
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 73.6
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.7
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 73.6
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 75.3
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 74.1
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.6
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.0
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 74.1
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 73.6
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 73.0
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 72.4
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 73.0
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 72.4
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.8
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.4e-66 256.5 171 73.1
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 71.8
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 72.4
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 70.7
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 70.1
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 71.8
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 70.7
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.6e-65 251.9 171 73.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 70.1
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 70.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 70.7
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 70.7
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 70.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.3e-64 250.0 175 70.9
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.3e-64 249.2 175 72.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 70.1
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 3.9e-64 248.4 174 70.1
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 5.1e-64 248.1 173 69.9
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 71.3
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 8.7e-64 247.3 194 66.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 70.1
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 70.1
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 68.4
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 69.0
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.7e-63 244.6 198 64.1
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 69.5
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 69.0
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 69.5
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 67.8
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 2.8e-62 242.3 164 71.3
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 6.3e-62 241.1 158 74.7
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.1e-61 240.4 164 70.7
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 3.1e-61 238.8 174 69.0
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 66.1
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.3e-59 233.4 174 67.8
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 66.7
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 6.5e-59 231.1 146 77.4
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.5e-59 230.7 156 70.5
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 66.7
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 4.2e-58 228.4 171 65.5
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 66.7
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.7e-57 225.7 173 64.2
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 6.1e-57 224.6 143 72.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 7.9e-57 224.2 151 70.2
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 1.0e-56 223.8 175 64.6
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 65.5
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 65.5
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 65.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 65.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 6.7e-56 221.1 174 63.8
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 1.1e-55 220.3 174 62.6
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.1e-55 220.3 174 64.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 9.7e-55 217.2 174 64.4
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 1.7e-54 216.5 174 62.1
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 8.2e-54 214.2 174 63.2
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 1.1e-53 213.8 174 63.2
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.8e-53 213.0 174 62.1
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.9e-51 205.7 174 62.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 3.8e-51 205.3 147 68.7
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 8.5e-51 204.1 172 60.5
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.4e-50 203.4 172 60.5
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 5.5e-50 201.4 174 59.2
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 9.4e-50 200.7 196 54.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.4e-48 196.8 122 72.1
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.8e-48 196.4 122 73.8
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.3e-47 192.2 122 73.8
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 4.4e-47 191.8 171 57.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 9.7e-47 190.7 176 58.5
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.3e-45 184.9 239 44.8
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.2e-44 183.7 175 54.9
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.7e-43 179.9 174 53.4
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 3.2e-42 175.6 176 52.8
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.1e-41 172.9 182 52.2
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 9.7e-39 164.1 173 51.4
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.0e-36 156.4 173 43.9
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.3e-35 153.7 94 71.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 8.5e-35 151.0 94 70.2
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 7.2e-34 147.9 95 69.5
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 3.4e-31 139.0 93 66.7
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 2.5e-26 122.9 82 70.7
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-25 119.4 127 55.1
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.7e-22 110.2 96 52.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.2e-22 109.8 75 68.0
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 8.3e-22 107.8 171 39.2
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.7e-20 102.8 76 60.5
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 5.0e-19 98.6 85 61.2
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.6e-17 93.6 55 72.7
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-16 89.7 53 73.6
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.2e-15 87.4 177 35.0
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.3e-14 84.0 48 75.0
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.0e-11 72.0 38 78.9
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.5e-10 69.7 93 44.1
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.1e-08 62.8 171 31.6
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.4e-06 55.1 50 56.0


User provided reference genes

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