Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 4.0e-157 558.1 299 100.0
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 1.7e-123 446.4 299 77.9
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.2e-123 446.0 299 78.9
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.5e-121 438.7 299 78.6
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 6.0e-121 438.0 307 76.9
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 3.0e-120 435.6 300 76.3
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.0e-120 435.6 307 76.5
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.9e-120 435.3 299 77.9
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.5e-119 433.3 300 76.0
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.9e-119 433.0 299 75.6
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 7.3e-119 431.0 299 77.6
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 4.8e-118 428.3 295 76.9
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 6.2e-118 427.9 299 75.6
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 8.1e-118 427.6 303 76.6
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.8e-117 426.4 303 75.9
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.6e-116 422.5 299 74.6
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 7.6e-116 421.0 301 74.4
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 9.9e-116 420.6 301 74.1
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.2e-115 419.5 301 74.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.4e-115 417.9 301 73.8
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 6.4e-115 417.9 302 74.2
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 8.4e-115 417.5 299 75.3
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 8.4e-115 417.5 298 73.8
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 1.1e-114 417.2 300 73.7
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.4e-114 416.8 301 74.4
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.9e-114 416.4 301 72.4
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 4.2e-114 415.2 299 72.9
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.4e-114 414.8 302 73.5
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.4e-114 414.8 302 73.5
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.4e-114 414.8 301 74.4
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 5.4e-114 414.8 302 73.8
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.2e-113 413.7 302 73.5
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 1.2e-113 413.7 299 73.6
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.7e-113 412.5 282 77.0
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.9e-113 411.0 301 73.1
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.8e-112 409.8 295 73.6
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 2.3e-112 409.5 304 72.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 8.7e-112 407.5 283 75.6
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 8.7e-112 407.5 299 71.6
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.5e-111 406.8 301 72.4
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.9e-111 406.4 292 73.3
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.9e-111 406.4 291 73.2
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.5e-111 406.0 283 75.3
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 3.3e-111 405.6 306 70.6
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 3.3e-111 405.6 306 70.6
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 3.3e-111 405.6 306 70.6
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 4.3e-111 405.2 278 77.0
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 9.6e-111 404.1 302 72.5
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 9.6e-111 404.1 297 71.7
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 9.6e-111 404.1 301 71.1
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.8e-110 402.5 299 72.6
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 3.7e-110 402.1 301 72.4
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 8.1e-110 401.0 292 72.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.8e-109 399.8 295 71.2
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 2.4e-109 399.4 300 71.3
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 2.4e-109 399.4 301 71.8
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 3.1e-109 399.1 298 69.5
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 3.1e-109 399.1 295 70.2
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 4.0e-109 398.7 307 71.0
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 6.9e-109 397.9 298 69.5
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 6.9e-109 397.9 298 69.1
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 9.0e-109 397.5 299 70.6
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-108 397.1 301 71.4
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.5e-108 396.7 298 69.8
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.0e-108 396.4 304 71.4
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.6e-108 396.0 282 74.1
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.6e-108 396.0 301 70.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 3.4e-108 395.6 295 71.9
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 4.5e-108 395.2 299 71.9
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 5.8e-108 394.8 300 70.7
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.3e-107 393.7 299 70.2
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.3e-107 393.7 287 70.7
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.7e-107 393.3 299 69.2
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.7e-107 393.3 299 68.9
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.2e-107 392.9 298 69.8
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 2.9e-107 392.5 299 69.6
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.1e-106 390.6 299 70.9
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.4e-106 389.4 335 63.9
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.2e-106 389.0 299 69.6
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 5.5e-106 388.3 290 70.0
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 9.3e-106 387.5 297 70.4
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.7e-105 386.0 291 70.4
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-105 386.0 280 72.9
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.5e-105 385.6 291 70.4
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 3.5e-105 385.6 329 66.0
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 4.6e-105 385.2 328 65.5
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.0e-105 384.8 265 77.0
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 7.9e-105 384.4 281 72.6
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 7.9e-105 384.4 298 69.1
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.0e-104 384.0 296 68.9
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-104 383.3 266 76.3
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 3.0e-104 382.5 279 72.4
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.0e-104 382.5 279 72.4
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 3.0e-104 382.5 276 74.3
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.7e-104 381.3 267 76.0
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 6.7e-104 381.3 299 67.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 6.7e-104 381.3 275 73.8
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.7e-104 380.9 265 76.2
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.3e-103 379.0 299 67.2
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 4.3e-103 378.6 279 72.0
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.3e-103 378.6 276 73.6
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 7.4e-103 377.9 316 66.1
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 7.4e-103 377.9 298 68.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 1.3e-102 377.1 275 72.7
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.6e-102 376.7 282 71.6
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.7e-102 375.6 282 72.0
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.4e-101 373.6 275 72.4
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.4e-101 373.6 301 68.8
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 5.8e-100 368.2 272 72.1
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 2.2e-99 366.3 279 67.7
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.5e-99 364.8 266 74.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 8.4e-99 364.4 275 71.3
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.1e-98 364.0 275 69.5
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-96 356.3 284 70.4
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.0e-96 355.9 257 72.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.0e-96 355.9 308 61.4
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 5.1e-96 355.1 282 66.3
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.3e-95 352.1 297 61.6
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-95 351.7 265 73.2
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.3e-94 348.2 302 65.2
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.8e-93 346.7 276 65.6
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.3e-93 345.1 302 64.9
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.0e-92 343.2 297 65.0
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.7e-92 341.3 231 77.1
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.3e-91 340.5 344 58.1
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 5.5e-90 335.1 293 63.5
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 6.1e-89 331.6 282 64.5
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.0e-88 330.9 281 60.5
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.0e-88 329.3 274 61.7
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 9.1e-85 317.8 212 80.2
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 2.3e-80 303.1 304 59.9
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.4e-77 293.9 297 56.9
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 5.3e-77 292.0 201 75.1
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.3e-75 287.3 282 53.2
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.6e-71 273.1 222 66.2
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 4.4e-71 272.3 267 58.4
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 8.2e-70 268.1 279 54.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 4.5e-68 262.3 250 60.0
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 6.1e-65 251.9 163 78.5
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.0e-64 251.1 210 61.4
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 2.2e-62 243.4 193 69.9
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 1.2e-60 237.7 255 49.4
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.1e-53 213.0 163 71.2
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.2e-41 174.5 177 57.6
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 4.9e-38 162.5 178 52.8
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 4.9e-38 162.5 178 52.8
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 2.8e-33 146.7 107 67.3
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 2.8e-33 146.7 107 67.3
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 2.7e-28 130.2 94 69.1
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 3.9e-27 126.3 145 53.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 1.1e-26 124.8 81 77.8
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.5e-26 124.4 93 69.9
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 4.7e-25 119.4 96 69.8
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 1.2e-23 114.8 113 60.2
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.2e-20 104.8 82 62.2
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.1e-16 91.7 109 50.5
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.1e-13 81.6 52 82.7
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.4e-13 81.3 59 72.9
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.2e-12 78.2 83 48.2
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 4.6e-12 76.3 85 45.9
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 2.5e-10 70.5 55 63.6
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 4.3e-10 69.7 83 45.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 9.6e-10 68.6 55 63.6
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 9.6e-10 68.6 91 40.7
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 9.6e-10 68.6 79 46.8
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.3e-09 68.2 70 61.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.1e-08 65.1 59 50.8
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 2.6e-07 60.5 44 65.9
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 1.7e-06 57.8 43 65.1
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 1.7e-06 57.8 43 65.1


User provided reference genes

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